Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi779g00002 ATGGGTCTCTGCTTTTCTTCTCCCTCTCGCTCTGAACTAAACACTTCTTCCCTCAACCGCCCTCAGTATTCAGGTTCAGCGAGCACTGACAGCAAGAACGTGGGGTCCTCTGCAACCACTGCCACGACAAGCAGCGCCGAGAAGAGTCAATTTTCGGAGATTACAAGTGGAAGCTTTGACGGCGATGGATCTGTTCCTCTTCCTTCCCCAGGTGGCCAGATTCTTGAAAGGCCAAACTTGAAGGTGTTCAGTTTTGGGGACTTGAAATCTGCAACAAAGAGTTTCAAATCTGATACATTGCTTGGTGAAGGTGGTTTTGGCAAAGTTTACAAGGGTTGGTTAGATGAGAAGACTCTCACACCTGCAAGAGCAGGCTCTGGGATGGTTGTTGCCATCAAAAAATTGAACCCAGAAAGCACGCAAGGATTTCAAGAGTGGCAGTCAGAAGTCAACTTTTTGGGAAGGCTCTCTCACCCCAACCTGGTCAAATTATTGGGTTACTGTTGGGACGATGACGAGCTTCTTCTTGTGTATGAGTTCTTGCCGAGGGGAAGCTTGGAGAATCATCTCTTCAGAAGAAATCCTAACATAGAACCACTTTCTTGGAACACCCGAATTAAAATAGCTATTGGTGCAGCTCGGGGCTTGGCTTTCTTGCACACTTCTGAAAAGCAAGTCATATACAGAGATTTCAAGGCCTCAAATATACTCCTCGATGGGAATTACAATGCAAAGATATCAGATTTTGGCTTAGCTAAATTTGGGCCTTCCGGGGGAGATTCACATGTAACTACCAGGGTCATGGGCACATATGGTTATGCTGCTCCAGAATACATTGCAACAGGCCACTTGTACGTGAAGAGTGATGTGTACGGCTTCGGTGTTGTGTTGCTAGAAATGATGACAGGCATGCGAGCACTTGATACAAAGAGGCCAACAGGGCAGCAGAACCTGGTTGAATGGGTTAGGCCTTTACTCTCAAATAAAAGGAAGTTGAAAACCATAATGGATGCAAAGATAGAGGGCCAATATTCACTCAAGGCAGCATTGCAATCAGCACAGCTTACACTAAAATGCTTAGAATCTGATCCTAAACACCGTCCTTCTATGAAAGAAGTATTGGAGGCATTGGAAGGAATTGATGCTATTCAGGACAAATCCAAGAACCGCAATTCTCACCATCCTCAGCACCACAATTCTCATCAATCTCAACTTCATTCTCGGCAGAGAGTTGTACAAGTATAA 1245 0.4522 MGLCFSSPSRSELNTSSLNRPQYSGSASTDSKNVGSSATTATTSSAEKSQFSEITSGSFDGDGSVPLPSPGGQILERPNLKVFSFGDLKSATKSFKSDTLLGEGGFGKVYKGWLDEKTLTPARAGSGMVVAIKKLNPESTQGFQEWQSEVNFLGRLSHPNLVKLLGYCWDDDELLLVYEFLPRGSLENHLFRRNPNIEPLSWNTRIKIAIGAARGLAFLHTSEKQVIYRDFKASNILLDGNYNAKISDFGLAKFGPSGGDSHVTTRVMGTYGYAAPEYIATGHLYVKSDVYGFGVVLLEMMTGMRALDTKRPTGQQNLVEWVRPLLSNKRKLKTIMDAKIEGQYSLKAALQSAQLTLKCLESDPKHRPSMKEVLEALEGIDAIQDKSKNRNSHHPQHHNSHQSQLHSRQRVVQV 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi779g00002 414 Pfam Protein tyrosine and serine/threonine kinase 98 377 IPR001245 GO:0004672|GO:0006468
Gabi779g00002 414 MobiDBLite consensus disorder prediction 1 73 - -
Gabi779g00002 414 ProSitePatterns Protein kinases ATP-binding region signature. 101 134 IPR017441 GO:0005524
Gabi779g00002 414 Gene3D Phosphorylase Kinase; domain 1 79 180 - -
Gabi779g00002 414 CDD STKc_IRAK 101 380 - -
Gabi779g00002 414 ProSitePatterns Serine/Threonine protein kinases active-site signature. 226 238 IPR008271 GO:0004672|GO:0006468
Gabi779g00002 414 MobiDBLite consensus disorder prediction 1 59 - -
Gabi779g00002 414 FunFam Serine/threonine-protein kinase PBS1 181 396 - -
Gabi779g00002 414 ProSiteProfiles Protein kinase domain profile. 95 380 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi779g00002 414 SUPERFAMILY Protein kinase-like (PK-like) 73 378 IPR011009 -
Gabi779g00002 414 PANTHER OS01G0588500 PROTEIN-RELATED 40 380 - -
Gabi779g00002 414 Gene3D Transferase(Phosphotransferase) domain 1 181 406 - -
Gabi779g00002 414 FunFam Serine/threonine-protein kinase BIK1 65 180 - -
Gabi779g00002 414 MobiDBLite consensus disorder prediction 387 414 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi779g00002 Gabi-Chr779 9634 13881 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi779g00002 81 377 Glycoside Hydrolase AT3G07070 52.013 5.63e-104 312
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Gabi779g00002 PK_Tyr_Ser-Thr 8.1e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi779g00002 - - gmx:100794193 659.833