Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi775g00020 ATGGGGAGAGGGAAGATCGTGGTGAGAAGGATCGACAATTTGACGAGCAGGCAAGTGACGTTCTCGAAGCGAAGGAGTGGTTTGCTGAAGAAGGCGAAGGAGCTTGCGATCCTGTGCGATGCTGATGTAGGAGTTATGATTTTCTCCAGCACTGGTAAACTCCACGATTTCGCCAGCACCAGCATGAAATCTGTTATTGATCGATACAACAAAACAAAAGAGGAGCACCATCCACTTGGGAGTTCAACCTCTGAAATTAAGTTTTGGCAAAGGGAGGCAGCAATGTTAAGGCAACAGTTGCAAAACTTGCAAGAAAGTCATCGGCACATGATGGGAGAACTGTCAGGTTTGACTGTAAAAGAATTACAGACTTTGGAGAACAAACTGGAAATTGGCCTTCGTGGTATACGTGAGAAAAAGGACCAACTTTTAATGGACGAAATATATGAACTGCATCAAAAGGGAAACCTCATTCACCAAGAAAATATGGAACTGTATAAGAAGGTAAACCTAATTCGTCAAGAAAACATGGAATTGAAAAAGAAGGTCAATGGAACAAGAGATGGGAATGGAACAAACAGAAATTCTGTTCTCACAAGTGGTCTGGGCACAGGAGAGGAATTCCAAGTTCCACTGAATCTGCAGCTAAGTCAGCCACAGCAACAAAACTCAGAGGCACCTTCAGGAGCTACAAAATTGGGCAGATTGCAACTACGTTGA 720 0.4347 MGRGKIVVRRIDNLTSRQVTFSKRRSGLLKKAKELAILCDADVGVMIFSSTGKLHDFASTSMKSVIDRYNKTKEEHHPLGSSTSEIKFWQREAAMLRQQLQNLQESHRHMMGELSGLTVKELQTLENKLEIGLRGIREKKDQLLMDEIYELHQKGNLIHQENMELYKKVNLIRQENMELKKKVNGTRDGNGTNRNSVLTSGLGTGEEFQVPLNLQLSQPQQQNSEAPSGATKLGRLQLR 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi775g00020 239 MobiDBLite consensus disorder prediction 218 239 - -
Gabi775g00020 239 Coils Coil 162 182 - -
Gabi775g00020 239 Gene3D - 14 110 IPR036879 GO:0003677|GO:0046983
Gabi775g00020 239 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Gabi775g00020 239 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Gabi775g00020 239 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Gabi775g00020 239 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Gabi775g00020 239 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Gabi775g00020 239 MobiDBLite consensus disorder prediction 182 202 - -
Gabi775g00020 239 Pfam K-box region 83 169 IPR002487 GO:0003700|GO:0005634|GO:0006355
Gabi775g00020 239 MobiDBLite consensus disorder prediction 188 202 - -
Gabi775g00020 239 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 211 - -
Gabi775g00020 239 Coils Coil 86 113 - -
Gabi775g00020 239 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Gabi775g00020 239 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Gabi775g00020 239 SUPERFAMILY SRF-like 2 89 IPR036879 GO:0003677|GO:0046983
Gabi775g00020 239 CDD MADS_MEF2_like 2 77 IPR033896 GO:0000977|GO:0045944
Gabi775g00020 239 ProSiteProfiles K-box domain profile. 86 175 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi775g00020 Gabi-Chr775 160589 178050 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi775g00020 1 232 MADS-box Gene Family AT4G37940 56.652 7.98e-84 247
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Gabi775g00020 K-box 5.4e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi775g00020 K09264 - gmx:100812413 372.089