Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi775g00006 ATGGAGTTCTATGACCAGGATTTCTTGGAGGAATTAATGGCTCTAAGAAGAGAAACATGGGACACCAATCCAAGTAATGAAGAAAACCAGTTCTTCTCTAATGGCTGGAGTTTTGACTGTTTTGATCAAAACTCTCTAGCTTATCTCCCGAACTCTTCTTGTGGTCAAGAAGTTCCTCAAAGTTATAACAACGACTACACCTTCAATGAAATCTATGGCTCTTTACTTGATGAATCTTCTGCACCACAGATTATCGATTCATACTACAATACCCTTGATACTACACTTAGTACCCCTTCATTTCTTGCTCAAGAAGATTACCCATTTTCCATGATGGAAGAAGAGGATCCGGGTTTGCTTGGGGAAGAGCTTCAGAATTTGGAGTTGCAAAACACATGCAAAATGGAGCCAACCCAATCCCCTGAAATGCCAGTTTTCAACATGGGTATGGGTTTGGAAAGAAAGAATCGTGCAAAGAAGCTGCAGGGGCAACCCTCCAAGAATCTAATGGCGGAGAGGAGAAGAAGAAAGAGATTAAACGATCGTCTTTCAATGCTAAGAGCTATTGTCCCTAAGATAAGTAAGATGGACAGAACATCTATACTTGGAGACACTATTGATTACATGAAAGAACTTCTGGAGAAGATCAACAATCTGCAACAAGAAATAGAAGTAGACTCAACCATGGCAAGCATTTTCAAAGATGAGAAGCCAAATGAGATCCTAGTGAGAAATTCACCCAAGTTTGAGGTGGAGAGGAGTGTGGACACCCGGGTTGAAATTTGTTGTGCAGGGAAGCCAGGGTTGTTGTTATCCACAGTAAACACCCTGGAAGCATTAGGCCTTGAGATTCAACAGTGTGTTATTAGCTGTTTCAATGATTTCACAATGCAAGCTTCTTGCTCAGAGGAAATGGAGCGAAGGACAATGCTGAGTTCTGAAGACATAAAGCAAGCATTATTTAGAAGTGCAGGATATGGAGGAAGATGTTTGTGA 996 0.4116 MEFYDQDFLEELMALRRETWDTNPSNEENQFFSNGWSFDCFDQNSLAYLPNSSCGQEVPQSYNNDYTFNEIYGSLLDESSAPQIIDSYYNTLDTTLSTPSFLAQEDYPFSMMEEEDPGLLGEELQNLELQNTCKMEPTQSPEMPVFNMGMGLERKNRAKKLQGQPSKNLMAERRRRKRLNDRLSMLRAIVPKISKMDRTSILGDTIDYMKELLEKINNLQQEIEVDSTMASIFKDEKPNEILVRNSPKFEVERSVDTRVEICCAGKPGLLLSTVNTLEALGLEIQQCVISCFNDFTMQASCSEEMERRTMLSSEDIKQALFRSAGYGGRCL 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi775g00006 331 Gene3D - 171 245 IPR036638 GO:0046983
Gabi775g00006 331 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 167 225 IPR036638 GO:0046983
Gabi775g00006 331 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 61 326 - -
Gabi775g00006 331 Pfam Helix-loop-helix DNA-binding domain 169 212 IPR011598 GO:0046983
Gabi775g00006 331 CDD ACT_UUR-ACR-like 257 320 - -
Gabi775g00006 331 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 163 212 IPR011598 GO:0046983
Gabi775g00006 331 Coils Coil 202 229 - -
Gabi775g00006 331 SMART finulus 169 218 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi775g00006 Gabi-Chr775 43785 45101 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi775g00006 148 331 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G10570 65.608 1.21e-73 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gabi775g00006 HLH 1.4e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi775g00006 - - gmx:100812578 568.54