Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi775g00004 ATGTCACCGCCGGTGCTGGGCATGGGGGAGGAGGGTAAAAGCAATGTCACTTTGTTGGTTTCCTCAACAACAAGGGAAAGTGTGTGCCTCAAGAACTTAGAATTAAAAGAACGCAATTACATGGGATTATCTGATTGTTCTTCTGTGGACAGCTCAGTTCCATCCTTCTCAGATGAGAGTAAAAGTAAGCTGAACATGAAGGCCACAGAACTGAGGTTGGGGCTTCCAGGATCACAGTCTCCTGAAAGAGATTCTGATTTTTGCTTAAGAAGCTCAATTCAATTTGATGAAAAACCTCTGTTTCCTTTGCGTCCTTCGATTGATGATCACCATTCATCAGCAAAGACTGCTCTATTGGGCAACAAAAGAGGGTTCTCAGATGCCATGAATGGGTTCTCAGAGGTAAAAATACCAATTTACTCGAAGGACATGTACATTTCAAAAACATTAGTTGAGCCAAACACTAAAAATACCCAATCTATCATGCAGGGGAAATTCCTAGTTAATTCGGAGGCCAATCCAATACTGTCACCCAGGCCTTCTTCTAACTTAGGATTAAAACCTGGTTCTACGCTTGAGAATGTTGGGGCTCAACCAGCCAAAATGAAAGAAGTAGTAATGCCGAAGGCAGGACTTGAGAGGCCTCATGCTGTCAATGAAACCATACCAAGTCTTAATGATTCTGCAAATAATAATAACAGTGCACCAGCTACCAAGGCTCAGGTTGTGGGGTGGCCTCCTATAAGATCGTTTAGGAAAAATTCATTGGCAACTAATTCAAAGAACACCGAAGAAGTTGATGGAAAAGGAGGGTCTGGTGGTGCACTGTTCGTTAAGGTCAGTATGGATGGTGCTCCCTATTTAAGGAAAGTAGACTTGAAGAATTACTCTACTTATCCAGAATTATCTTCTGCACTAGAAAAGATGTTCAGCTGTTTTACTATAAGTAAATGTGGATCTAATGGAACTTTGGGTGGAGAAATACTTAATGAAACCAAGCTGAAGGATCTCCTTCATGGATCAGAATATGTTCTTACTTATGAGGACAAAGATGGCGACTGGATGCTTGTGGGTGATGTTCCCTGGGAGATGTTTATTGAAACATGCAGGAGGCTGAGGATCATGAAGAGTTCTGATGCCATTGGTCTAGCTCCCAGGGCTGTTGAAAAAAGTAAGAGCAGGAACTAG 1188 0.4217 MSPPVLGMGEEGKSNVTLLVSSTTRESVCLKNLELKERNYMGLSDCSSVDSSVPSFSDESKSKLNMKATELRLGLPGSQSPERDSDFCLRSSIQFDEKPLFPLRPSIDDHHSSAKTALLGNKRGFSDAMNGFSEVKIPIYSKDMYISKTLVEPNTKNTQSIMQGKFLVNSEANPILSPRPSSNLGLKPGSTLENVGAQPAKMKEVVMPKAGLERPHAVNETIPSLNDSANNNNSAPATKAQVVGWPPIRSFRKNSLATNSKNTEEVDGKGGSGGALFVKVSMDGAPYLRKVDLKNYSTYPELSSALEKMFSCFTISKCGSNGTLGGEILNETKLKDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFIETCRRLRIMKSSDAIGLAPRAVEKSKSRN 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi775g00004 395 ProSiteProfiles PB1 domain profile. 275 377 IPR000270 GO:0005515
Gabi775g00004 395 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 63 382 IPR003311 GO:0005634|GO:0006355
Gabi775g00004 395 Pfam AUX/IAA family 69 386 IPR033389 -
Gabi775g00004 395 FunFam Auxin-responsive protein 271 387 - -
Gabi775g00004 395 Gene3D - 271 389 - -
Gabi775g00004 395 SUPERFAMILY CAD & PB1 domains 272 376 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi775g00004 Gabi-Chr775 19071 22945 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi775g00004 264 385 B3 DNA Binding Superfamily AT4G23980 28.689 4.18e-08 53.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Gabi775g00004 AUX_IAA 4.3e-89 CL0072