Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi775g00002 ATGTCACCGCCGGTGCTGGGCATGGGGGAGGAGGGTAAAAGCAATGTCACTTTGTTGGTTTCCTCAACAACAAGGGAAAGTGTGTGCCTCAAGAACTTAGAATTAAAAGAACGCAATTACATGGGATTATCTGATTGTTCTTCTGTGGACAGCTCAGTTCCATCCTTCTCAGATGAGAGTAAAAGTAAGCTGAACATGAAGGCCACAGAACTGAGGTTGGGGCTTCCAGGATCACAGTCTCCTGAAAGAGATTCTGATTTTTGCTTAAGAAGCTCAATTCAATTTGATGAAAAACCTCTGTTTCCTTTGCGTCCTTCGATTGATGATCACCATTCATCAGCAAAGACTGCTCTATTGGGCAACAAAAGAGGGTTCTCAGATGCCATGAATGGGTTCTCAGAGGGGAAATTCCTAGTTAATTCGGAGGCCAATCCAATACTGTCACCCAGGCCTTCTTCTAACTTAGGATTAAAACCTGGTTCTACGCTTGAGAATGTTGGGGCTCAACCAGCCAAAATGAAAGAAGTAGTAATGCCGAAGGCAGGACTTGAGAGGCCTCATGCTGTCAATGAAACCATACCAAGTCTTAATGATTCTGCAAATAATAATAACAGTGCACCAGCTACCAAGGCTCAGGTTGTGGGGTGGCCTCCTATAAGATCGTTTAGGAAAAATTCATTGGCAACTAATTCAAAGAACACCGAAGAAGTTGATGGAAAAGGAGGGTCTGGTGGTGCACTGTTCGTTAAGGTCAGTATGGATGGTGCTCCCTATTTAAGGAAAGTAGACTTGAAGAATTACTCTACTTATCCAGAATTATCTTCTGCACTAGAAAAGATGTTCAGCTGTTTTACTATAAGTAAATGTGGATCTAATGGAACTTTGGGTGGAGAAATACTTAATGAAACCAAGCTGAAGGATCTCCTTCATGGATCAGAATATGTTCTTACTTATGAGGACAAAGATGGCGACTGGATGCTTGTGGGTGATGTTCCCTGGGAGATGTTTATTGAAACATGCAGGAGGCTGAGGATCATGAAGAGTTCTGATGCCATTGGTCTAGCTCCCAGGGCTGTTGAAAAAAGTAAGAGCAGGAACTAG 1101 0.4296 MSPPVLGMGEEGKSNVTLLVSSTTRESVCLKNLELKERNYMGLSDCSSVDSSVPSFSDESKSKLNMKATELRLGLPGSQSPERDSDFCLRSSIQFDEKPLFPLRPSIDDHHSSAKTALLGNKRGFSDAMNGFSEGKFLVNSEANPILSPRPSSNLGLKPGSTLENVGAQPAKMKEVVMPKAGLERPHAVNETIPSLNDSANNNNSAPATKAQVVGWPPIRSFRKNSLATNSKNTEEVDGKGGSGGALFVKVSMDGAPYLRKVDLKNYSTYPELSSALEKMFSCFTISKCGSNGTLGGEILNETKLKDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFIETCRRLRIMKSSDAIGLAPRAVEKSKSRN 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi775g00002 366 Pfam AUX/IAA family 69 357 IPR033389 -
Gabi775g00002 366 Gene3D - 242 360 - -
Gabi775g00002 366 ProSiteProfiles PB1 domain profile. 246 348 IPR000270 GO:0005515
Gabi775g00002 366 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 63 353 IPR003311 GO:0005634|GO:0006355
Gabi775g00002 366 FunFam Auxin-responsive protein 242 358 - -
Gabi775g00002 366 SUPERFAMILY CAD & PB1 domains 243 347 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi775g00002 Gabi-Chr775 19071 24047 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi775g00002 235 356 B3 DNA Binding Superfamily AT4G23980 28.689 3.46e-08 53.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Gabi775g00002 AUX_IAA 1.4e-89 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi775g00002 K14484 - gmx:100815447 558.525