Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi773g00008 ATGTCTATTCAGCATGAAAATTCTGATATAAAAGATGGATCAGGTCCACAGAAAAGGCTAACAAATCTTATGCATCAAGCTGGGAACCATTTTTGTGCTGATTGTGGAACTCCAGAGCCAAAATGGGTATCTTCAAGTCTTGGAGTATTTATTTGCATCAAGTGTTCTGGCATACATAGAAGTCTAGGAGTCCACATATCAAAGGTTCTATCACTGAAGCTAGATGAATGGACAGATGAACAAGTTGATGCATTAGTGAAGTTAGGTGGAAATACATTATTAAATAAGAAGTATGAAGCTTGCCTCCCAAGTAATGTAAAAAAACCAAAACCATATTCCTCCATCGAGGAGCGCTCTGATTTCATTAGGAGAAAATATGAGCTGCAACAATTTATGGAAAGTGATGACAATTCTTCATGCTCCATTGTACAATATCAAGGAAGAAGAAGTACATCATTGCCTCCGAGCAGTTCTTCATGTTACAATTCTCATATGGACAAGAAACAATATGAAAAACACCCAACCAAACATCATCGTATTGGACATGCCTTCCGAAATAGCCGGACAAGAAAAGATTCTGAGCACAAGTCTTCAAAGAAGAGTAACTCATTGGCAGGTATGGTTGAATTTGTTGGGTTGATCAAGGTTAATGTCGTTAGAGGCACTCGTCTGGCAGTTCGAGATGTAATGACCAGCGACCCTTATGTCATCCTTTCTTTGGGACACCAATCAGTAAAAACACGGTACATAAAGAACAATTTGAATCCAGTCTGGAATGAAAGCCTAATGCTATCAATTCCAGAGAACATTCCTCCTCTTAAAGTGCTTGTGTATGATAAGGATACATTTTCAACTGATGATTTTATGGGTGAAGCTGAAATAGACATTCAACCTCTAGTTTTAGCCGCAAGGGCCTATGAGAAATCTACAATAAATGAGCCTATGCAGCTTGGGAAATTTTTAGCAAGCAATGACAACACTCTTGTTAGAGATGGTATCATATCCCTTGATGAAGGCAAGATCAAACAGGAAATCTCAGTGAGGTTACAGAATGTTGAGAGAGGTGTGCTGGAGATTGAGCTTGAGTGTGTTCCTCTTACTCAATAG 1107 0.3884 MSIQHENSDIKDGSGPQKRLTNLMHQAGNHFCADCGTPEPKWVSSSLGVFICIKCSGIHRSLGVHISKVLSLKLDEWTDEQVDALVKLGGNTLLNKKYEACLPSNVKKPKPYSSIEERSDFIRRKYELQQFMESDDNSSCSIVQYQGRRSTSLPPSSSSCYNSHMDKKQYEKHPTKHHRIGHAFRNSRTRKDSEHKSSKKSNSLAGMVEFVGLIKVNVVRGTRLAVRDVMTSDPYVILSLGHQSVKTRYIKNNLNPVWNESLMLSIPENIPPLKVLVYDKDTFSTDDFMGEAEIDIQPLVLAARAYEKSTINEPMQLGKFLASNDNTLVRDGIISLDEGKIKQEISVRLQNVERGVLEIELECVPLTQ 368
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Gabi773g00008 368 CDD ArfGap 20 126 - -
Gabi773g00008 368 Pfam C2 domain 213 300 IPR000008 -
Gabi773g00008 368 FunFam stromal membrane-associated protein 1 isoform X1 3 137 - -
Gabi773g00008 368 SUPERFAMILY ArfGap/RecO-like zinc finger 17 132 IPR037278 -
Gabi773g00008 368 Gene3D C2 domain 210 367 IPR035892 -
Gabi773g00008 368 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 209 304 IPR035892 -
Gabi773g00008 368 SMART arf_gap_3 17 139 IPR001164 GO:0005096
Gabi773g00008 368 Gene3D Arf GTPase activating protein 2 140 IPR038508 -
Gabi773g00008 368 SMART C2_3c 213 308 IPR000008 -
Gabi773g00008 368 PRINTS HIV Rev interacting protein signature 69 90 IPR001164 GO:0005096
Gabi773g00008 368 PRINTS HIV Rev interacting protein signature 29 48 IPR001164 GO:0005096
Gabi773g00008 368 PRINTS HIV Rev interacting protein signature 48 65 IPR001164 GO:0005096
Gabi773g00008 368 Pfam Putative GTPase activating protein for Arf 18 134 IPR001164 GO:0005096
Gabi773g00008 368 FunFam ADP-ribosylation factor GTPase-activating protein AGD12 210 368 - -
Gabi773g00008 368 CDD C2_ArfGAP 211 355 - -
Gabi773g00008 368 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12 13 368 IPR044518 GO:0005096|GO:0005543
Gabi773g00008 368 MobiDBLite consensus disorder prediction 171 185 - -
Gabi773g00008 368 ProSiteProfiles C2 domain profile. 191 310 IPR000008 -
Gabi773g00008 368 MobiDBLite consensus disorder prediction 146 164 - -
Gabi773g00008 368 ProSiteProfiles ARF GTPase-activating proteins domain profile. 17 139 IPR001164 GO:0005096
Gabi773g00008 368 MobiDBLite consensus disorder prediction 146 201 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Gabi773g00008 Gabi-Chr773 43359 48578 Dispersed/Transposed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi773g00008 11 368 C2H2 Transcription Factor Family AT4G21160 48.045 4.59e-119 346