Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi771g00012 ATGTGGTTTGTGATGTTAAGCTGCAACCTTGTATGTGTGTTCATCTTTGTGTTTCTGGCTTTGAATTGCTTTCTAGATTTTGGATCCAACGCTCAACTCATACCCCAAGATGAAGTGAAAGTACTACAAACAATATCAGACAAGGTAAAGAACTTGAACTGGAGAGTTACTGAACGTTCATGCAGTGGAGATAGAGGATTCGATAACAGGAATATTTTAGATAATCAAATCAATAGAAATGTCACGTGCGATTGTTCTTTCAACTCTAGCACCATTTGCCATGTGACTTTAATTGCGCTCAGGGGTCTCAGTATATCTGGAGTTATACCTGATGAATTTGGAAATCTCACTCATCTAATAACACTTGATCTCACTAGGAATTACCTCAATGGCTCAATTCCAAAGAGTCTTGGACGACTCTCGCTTGTCACTCTGTCACTTTTGGGAAATCAACTTAGTGGTCCAATTCCATCAGAAATTGGTGATATTGCTAGTCTGCAAGAACTGAACTTAGAAGATAATCAACTTGAAGGACCTCTTCCTCTCAGCCTTGGAAAATTGAGCAACTTGCAGAGATTACTTCTTTCTGCAAATAATTTCACAGGGACAATACCAGAAGAATTTGGTAATCTAAAGAATCTTGCTCAATTTAGGATAGATGGGAGCAGTTTATCTGGGAAGATACCCAATTTTATTGTGAACTGGACCAAACTTGAAAGATTGGATTTGCAGGGCACATCCTTGGAAGGTCCAATTCCTCCTGCTGTATCTAGCTTGAAAAATTTGAAAGAATTGAGAATATCTGATTTGAAGGGACCAACTATGACATTTCCTGATCTGAAGGATTTGAAACGCATGGAAAGACTGGCATTGAGGAATTGCTTAATCACTGGACCTATTCCAGGCAACATTGGGGAAATGCAAGGTTTAAAAATGCTAGATTTGAGCTTCAACAGGTTGACTGGTCCAATCCCAGATTCATTTCAAGGGTTGCAATCAACAATAAATTTCATGTTTCTGACTAACAATTCACTGAGTGGACAAATTCCAGGATGGATACTAAACAGCAAACAGAACATTGATTTATCTTACAACAATTTTACACAATCTACAGCATCTGATTGCCAGCTCTTGGATGTGAACTTAGTTTCCAGTCACTCTCCCTCAGCAAGCACTTCAGTTTCTTGTTTGAAGATGAACCTACCTTGCTCAGAAAAACCCCAGTATCATTCACTGTTCGTAAATTGTGGAGGACCTGCAGTTGAGTTTGAGGGCGATGAATATGAAGCTGACCAGAATTTACTTGGAATTTCAGACTTTGTTTCTAGTAATAATGGCCAATGGGCTTATAGCAGCACTGGAGTATTTGAAGGAAATGGCAATGTTAGTCATTTAGCAACAAATCAGTTTCCTTTGAATATTAGTGGCCCTGGATACTTGCAAACAGCCCGCACTGCCCCTCTTTCTCTTAATTACTATGGACTTTGTATGCTGAAGGGAAATTACAATGTGAAGCTTCATTTTGCTGAGATAATGTTTTCTAATGACCAGACTTTTAGTAGCCTTGGAAGGCGCATATTTGATGTTTCAATCCAAGGTTTTAAATATTTGAAAGATTTTAACATTGTGAAAGAAGCTGGTGGAGCTGGTAAGGAAAAAATTCTGGATTTTAATGTTGACGTGAATGATAGCACCTTGGAGATCCACTTATCCTGGGCAGGGAAAGGAACTAATGCCATTCCTGTGAGAGGTGTATATGGACCTCTTATATCTGCTATCACCGTGACCCCAAACTTTAAAATTCCTTCAAAGGGACTGTCTACTGGAGCCATTGTTGGAATTGTTGTTGCATCATGCGTGCTTGTCCTACTAATACTCTTTTCCCTTTGGAAGATGGGTTTCCTAGGAGGGAAAAATTCAACAGACAAAGAACTTCTAGAGCTGAAAACGGGCTATTTCAGTTTAAGACAAATTAAAGCTGCTACCAATAACTTTGACCCAGAAAATAAGATAGGTGAAGGAGGCTTTGGGCCAGTATACAAGGGTGTACTGTCAGATGGTGTTGTGATTGCTGTCAAGCAGCTCTCCTCCAAATCAAAACAAGGAAATCGTGAATTCGTTAATGAAATAGGCATGATATCTGCTTTGCAACATCCAAATCTTGTGAAGCTTTATGGCTGTTGCATTGAAGGAAACCAGTTGCTGCTAATATATGAATACATGGAGAACAATAGTCTTGCTCGTGCACTTTTTGGTAAACAAGATCAAAGGATGCATTTGGACTGGCCCACAAGAATGAAAATATGTGTAGGGATAGCAAAGGGATTAGCTTATCTTCATGAGGAATCAAGGTTGAAAATAGTACATAGGGATATTAAGGCAACCAATGTCTTACTTGATAAGCATCTGAATGCCAAGATCTCAGATTTTGGTTTAGCCAAGCTTGATGAAGAAGAGAATACACATATCAGCACTCGAATAGCTGGGACAATTGGTTACATGGCTCCTGAGTATGCTATGCGGGGTTACTTGACTGACAAAGCAGATGTCTATAGCTTCGGAGTTGTAGCTTTAGAGATTGTTAGTGGAAAAAGCAACACAAATTACAGGCCAAAGGAGGAGTTTGTTTATCTTCTAGATTGGGCTTATGTTCTCCAAGAGCAAGGAAACCTTTTGGAATTAGTGGATCCAAGTCTTGATTCAGGCTACCCCCAAGAAGAGGCCATGAGAATGCTGCAGTTGGCACTCTTGTGCACCAATCCATCTCCCACTCTAAGACCACCCATGTCATCTGTAGTAAGCATGCTTGAAGGAAAAACTCCAATTCAAGCACCAATAATCAAACGCAGTGACAATACACAAGATGCAAGATTTAAAGCCTTTGAGATGCTATCACAAGACAGCCAAACTCTTGTTTCTTCTGTATCCACACAAGATAGCATAGAGCAAAGAAGTAAATCAGTCAATGGGCCATGGGTTGACTCCTCCATATCTCTTCCAAGTGGAGAACATTATTCTTCATCCGATAATCTTCTTCGAGGTTCAAATGAGGTGTAA 3057 0.3971 MWFVMLSCNLVCVFIFVFLALNCFLDFGSNAQLIPQDEVKVLQTISDKVKNLNWRVTERSCSGDRGFDNRNILDNQINRNVTCDCSFNSSTICHVTLIALRGLSISGVIPDEFGNLTHLITLDLTRNYLNGSIPKSLGRLSLVTLSLLGNQLSGPIPSEIGDIASLQELNLEDNQLEGPLPLSLGKLSNLQRLLLSANNFTGTIPEEFGNLKNLAQFRIDGSSLSGKIPNFIVNWTKLERLDLQGTSLEGPIPPAVSSLKNLKELRISDLKGPTMTFPDLKDLKRMERLALRNCLITGPIPGNIGEMQGLKMLDLSFNRLTGPIPDSFQGLQSTINFMFLTNNSLSGQIPGWILNSKQNIDLSYNNFTQSTASDCQLLDVNLVSSHSPSASTSVSCLKMNLPCSEKPQYHSLFVNCGGPAVEFEGDEYEADQNLLGISDFVSSNNGQWAYSSTGVFEGNGNVSHLATNQFPLNISGPGYLQTARTAPLSLNYYGLCMLKGNYNVKLHFAEIMFSNDQTFSSLGRRIFDVSIQGFKYLKDFNIVKEAGGAGKEKILDFNVDVNDSTLEIHLSWAGKGTNAIPVRGVYGPLISAITVTPNFKIPSKGLSTGAIVGIVVASCVLVLLILFSLWKMGFLGGKNSTDKELLELKTGYFSLRQIKAATNNFDPENKIGEGGFGPVYKGVLSDGVVIAVKQLSSKSKQGNREFVNEIGMISALQHPNLVKLYGCCIEGNQLLLIYEYMENNSLARALFGKQDQRMHLDWPTRMKICVGIAKGLAYLHEESRLKIVHRDIKATNVLLDKHLNAKISDFGLAKLDEEENTHISTRIAGTIGYMAPEYAMRGYLTDKADVYSFGVVALEIVSGKSNTNYRPKEEFVYLLDWAYVLQEQGNLLELVDPSLDSGYPQEEAMRMLQLALLCTNPSPTLRPPMSSVVSMLEGKTPIQAPIIKRSDNTQDARFKAFEMLSQDSQTLVSSVSTQDSIEQRSKSVNGPWVDSSISLPSGEHYSSSDNLLRGSNEV 1018
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi771g00012 1018 Gene3D Transferase(Phosphotransferase) domain 1 741 958 - -
Gabi771g00012 1018 Gene3D Ribonuclease Inhibitor 36 271 IPR032675 -
Gabi771g00012 1018 Gene3D - 410 598 - -
Gabi771g00012 1018 FunFam Probable LRR receptor-like serine/threonine-protein kinase At1g53420 35 271 - -
Gabi771g00012 1018 SMART serkin_6 665 934 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi771g00012 1018 ProSitePatterns Serine/Threonine protein kinases active-site signature. 787 799 IPR008271 GO:0004672|GO:0006468
Gabi771g00012 1018 Pfam Protein tyrosine and serine/threonine kinase 668 936 IPR001245 GO:0004672|GO:0006468
Gabi771g00012 1018 SUPERFAMILY L domain-like 68 383 - -
Gabi771g00012 1018 Pfam Leucine Rich Repeat 165 187 IPR001611 GO:0005515
Gabi771g00012 1018 Pfam Leucine Rich Repeat 310 331 IPR001611 GO:0005515
Gabi771g00012 1018 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 15 973 - -
Gabi771g00012 1018 Pfam Malectin domain 412 593 IPR021720 -
Gabi771g00012 1018 CDD STKc_IRAK 671 938 - -
Gabi771g00012 1018 MobiDBLite consensus disorder prediction 998 1018 - -
Gabi771g00012 1018 FunFam Putative LRR receptor-like serine/threonine-protein kinase 741 948 - -
Gabi771g00012 1018 ProSiteProfiles Protein kinase domain profile. 665 947 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi771g00012 1018 SUPERFAMILY Protein kinase-like (PK-like) 650 955 IPR011009 -
Gabi771g00012 1018 Gene3D Phosphorylase Kinase; domain 1 634 740 - -
Gabi771g00012 1018 SMART LRR_typ_2 307 330 IPR003591 -
Gabi771g00012 1018 SMART LRR_typ_2 187 210 IPR003591 -
Gabi771g00012 1018 SMART LRR_typ_2 116 140 IPR003591 -
Gabi771g00012 1018 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 636 740 - -
Gabi771g00012 1018 Gene3D Ribonuclease Inhibitor 272 396 IPR032675 -
Gabi771g00012 1018 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 409 598 - -
Gabi771g00012 1018 FunFam Probable LRR receptor-like serine/threonine-protein kinase At1g53440 272 396 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi771g00012 Gabi-Chr771 140093 156121 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi771g00012 13 1003 Receptor kinase-like Gene Family AT1G53440 62.860 0.0 1241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gabi771g00012 PK_Tyr_Ser-Thr 4.1e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi771g00012 - - gmx:121173337 1564.67