Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi770g00014 ATGGCCGATGTTCCGGCGAGTCCAGGCGGCGAGAGCGGCGACCACAGCCCTCGATCCAGTTTCCGAGAGCAGGAACGGTACCTTCCAATCGCTAACATCAGTCGCATCATGAAGAAGGGGATTCCCGCTAACGGGAAAATCGCCAAGGACGCGAAGGAGACCGTACAGGAATGCGTTTCTGAGTTCATCAGCTTCATCACCAGCGAGGCGAGCGATAAATGCCAGAAAGAAAAGAGGAAGACCATCAACGGCGACGATTTGCTTTGGGCTATGGCCACTCTTGGTTTCGAAGATTATATTGAGCCTCTCAAGATTTACCTCGCCGCATACAGAGAGACTGAGGGTGATACAAAGGGTTCGGCCAAGGGTGGAGATGCATCTGCTAAGAAAGATGTTCATCCGTGTCCTAATCCTCAGTTTTCTCATCAAGGTTCTTTCTCACAAGGTGTTAATTACACGAATTCTCAGCCTCAGGCTCAACATATGATGATCGTTCCCATGCAAGGCCCAGAATAG 516 0.5058 MADVPASPGGESGDHSPRSSFREQERYLPIANISRIMKKGIPANGKIAKDAKETVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATLGFEDYIEPLKIYLAAYRETEGDTKGSAKGGDASAKKDVHPCPNPQFSHQGSFSQGVNYTNSQPQAQHMMIVPMQGPE 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi770g00014 171 PRINTS CCAAT-binding transcription factor subunit A signature 55 73 - -
Gabi770g00014 171 PRINTS CCAAT-binding transcription factor subunit A signature 93 111 - -
Gabi770g00014 171 PRINTS CCAAT-binding transcription factor subunit A signature 74 92 - -
Gabi770g00014 171 MobiDBLite consensus disorder prediction 115 153 - -
Gabi770g00014 171 ProSitePatterns NF-YB/HAP3 subunit signature. 58 74 IPR003956 GO:0005634|GO:0006355|GO:0043565
Gabi770g00014 171 MobiDBLite consensus disorder prediction 138 153 - -
Gabi770g00014 171 FunFam Nuclear transcription factor Y subunit B-3 16 139 - -
Gabi770g00014 171 MobiDBLite consensus disorder prediction 115 129 - -
Gabi770g00014 171 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 27 91 IPR003958 -
Gabi770g00014 171 SUPERFAMILY Histone-fold 24 126 IPR009072 GO:0046982
Gabi770g00014 171 Gene3D Histone, subunit A 14 144 IPR009072 GO:0046982
Gabi770g00014 171 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 17 152 IPR027113 GO:0001228|GO:0006355|GO:0016602
Gabi770g00014 171 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi770g00014 Gabi-Chr770 125359 128437 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi770g00014 7 171 CCAAT-HAP3 Transcription Factor Family AT2G37060 72.414 1.71e-80 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Gabi770g00014 CBFD_NFYB_HMF 1.5e-27 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi770g00014 K08065 - zju:107432901 290.812