Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi770g00003 ATGCCGCCCAAGCAGCAATCAAAAGCTGATGTAGCTAAGAAGCAGAAGCTTGTAGAGGACAAAACCTTCGGTCTCAAGAACAAAAACAAGAGCAAAAATGTCCAGAAATATGTCCAGAGCCTCAAGCAAAACGTGCAGCCCAAGCCCGATCCTTCCAAAGTCGATGCCAAGAAAAAGAAGGAGGAAGAGAAGGCCAAGGAGAAGGAGCTAAATGATTTGTTCAAAGTTGCTGTTAGTCAGCCTAAAGTGCCAGTTGGTGTTGATCCTAAGTCCATATTGTGTGAGTTTTTTAAAGCTGGGCAGTGTGCAAAGGGCTTCAAATGCAAGTTCTCACATGATTTGAATGTTCAGAGGAAAGGGGAAAAGATTGACATTTACAGTGATAAGCGAGACGAGGAAACAATGGAGGATTGGGATCAAGAGACCTTGGAGAAGGTGGTGGAGTCAAAGAAAACCGAGTATAATCAGAACAAACCAACTGACATTGTCTGTAAATTCTTTTTGGAAGCGGTGGAGAAGAAGCAATATGGTTGGTTTTGGGTCTGCCCCAACGCTGGTAAGAATTGCCACTATAGACATGCACTTCCACCTGGATATGTTTTGAAATCTCAAATGAAGGCTTTGTTAGAGGAAGAAACTGAAAAAATATCAATTGAAGAGGAGATTGAAAATCAGCGTGCCAAAGTGACAACTACAACTTCTATGACTCCTGAGTTATTCTTTCAATGGAAGAATAAGAAGATAGAAGAGAGAGATGCCAATTTGGCTGCACAACAGGCAGAGAGGGCTAAGAATGACCGCATGAGTGGTCGGGAGCTATTCTTGTCAGATGCTAGCTGGTTTGTGGATGATGCTGAAGCATATGACAAGTACCAGAGAGAAACGGAATCTGATGATACTGAACAGAGGGCGAATGGAAATGCTGCTGAAGATGGTCCCAGCTCCTCAGCAACAGCTGGTGTTGATGCTGAAGTTCCTGATGACGTTGATGACGATGATGATGATGAATTGGACATGGATGAGTTGAATGAATTAGAAGCAAGCTTATCAAAGACATCAATCCAAATTAAGGAAACAGGAGCTGAAGCTTAA 1092 0.4277 MPPKQQSKADVAKKQKLVEDKTFGLKNKNKSKNVQKYVQSLKQNVQPKPDPSKVDAKKKKEEEKAKEKELNDLFKVAVSQPKVPVGVDPKSILCEFFKAGQCAKGFKCKFSHDLNVQRKGEKIDIYSDKRDEETMEDWDQETLEKVVESKKTEYNQNKPTDIVCKFFLEAVEKKQYGWFWVCPNAGKNCHYRHALPPGYVLKSQMKALLEEETEKISIEEEIENQRAKVTTTTSMTPELFFQWKNKKIEERDANLAAQQAERAKNDRMSGRELFLSDASWFVDDAEAYDKYQRETESDDTEQRANGNAAEDGPSSSATAGVDAEVPDDVDDDDDDELDMDELNELEASLSKTSIQIKETGAEA 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi770g00003 363 ProSiteProfiles Zinc finger C3H1-type profile. 158 196 IPR000571 GO:0046872
Gabi770g00003 363 Gene3D - 205 279 - -
Gabi770g00003 363 Gene3D - 87 204 - -
Gabi770g00003 363 Coils Coil 246 266 - -
Gabi770g00003 363 Coils Coil 53 73 - -
Gabi770g00003 363 MobiDBLite consensus disorder prediction 324 338 - -
Gabi770g00003 363 SMART c3hfinal6 88 114 IPR000571 GO:0046872
Gabi770g00003 363 SMART c3hfinal6 158 195 IPR000571 GO:0046872
Gabi770g00003 363 Coils Coil 342 362 - -
Gabi770g00003 363 ProSiteProfiles Zinc finger C3H1-type profile. 88 115 IPR000571 GO:0046872
Gabi770g00003 363 PANTHER ZINC FINGER-CONTAINING PROTEIN P48ZNF 1 360 - -
Gabi770g00003 363 MobiDBLite consensus disorder prediction 40 64 - -
Gabi770g00003 363 SUPERFAMILY CCCH zinc finger 88 113 IPR036855 GO:0046872
Gabi770g00003 363 Coils Coil 208 228 - -
Gabi770g00003 363 MobiDBLite consensus disorder prediction 292 338 - -
Gabi770g00003 363 Pfam DRG Family Regulatory Proteins, Tma46 215 298 IPR032378 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi770g00003 Gabi-Chr770 23871 28632 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Gabi770g00003 DFRP_C 5.1e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi770g00003 - - gmx:100778701 588.186