Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi76g00006 ATGGAGATTTTCAAATGCTTGTACATCAACCTTCTCCTTACTTTCATGTTATCAGCAGTTTTAGCAATCGACCCTTACTCAGAGGCACTCCTGAGCCTAAGATCTGAGCTTGTAGATAGTGATAACAGTTTGCATGACTGGGTGGTACCCTCTGGAGGAAACTTAACAGGGAAATCATATGCATGTTCTTGGATTGGTATCAAGTGTAACAAGGATTCTACAATTGTAACTTCCATAGACCTGTCAATGAAGAAACTGGGGGGTCTAATGTCAGGGAAGCAATTTAGCATCTTCACAAAGCTAACTGATCTCAATCTGAGCCACAATTTATTCTCTGGGCAGCTTCCAGCGGAGATTTTTAACCTCACCAGCCTCAGAAGCTTGGATATAAGCAGAAACAATTTTTCTGGTCACTTCCCAGGTGGAATTCCCAGTCTCCAAAATTTGGTTGTGCTTGATGCCTTTAGCAACAGCTTTTCAGGGCAATTGCCTGCTGAATTATCTCAGCTACAATATCTTAAGGTTCTTAATCTAGCTGGGAGTTACTTCAAAGGATCAATTCCATCTGAATATAGTTCATTCAGAAGCCTTGAGTTTCTTCATCTGGCAGGAAATTCTCTCACAGGAAGTATACCTCCTGAACTGGGCAGCCTCAAAACAGTGACCCACATGGAGATTGGCTACAACTTTTACCAGGGTTTCATTCCATCCCAACTTGGTAATATGAGCCAGCTTCAGTATCTTGACATAGCAGGTGCAAATCTATCTGGCACAATACCAAAGCAACTCTCGAATCTCACAAGTTTGCAATCACTTTTTCTGTTCAGAAACCAGCTCACAGGGTCAATTCCAAGTGAGTTCAGCAAAATCACACCCCTCTCAGATTTAGATCTCTCTGATAACTTCCTTTCTGGGTCCATTCCTGAAAGCTTTTCTGAGCTAAAGAACCTAAGACTGCTCAGTCTCATGTACAATGACATGAGTGGTTCTGTTCCCGAAGGCATTGCACAACTACCATCCTTGGAAACTCTTCTCATTTGGAACAATCGCTTCTCTGGATCACTTCCACAGAGCTTAGGCAGGAACTCCAAACTCAAGTGGGTGGATGTTTCCACAAACAATTTCATTGGAAGCATTCCACCAGATATTTGTGTGAGTGGAGTACTATTTAAGCTGATCCTGTTTTCAAACAAATTCACAGGTGGTCTTTCATCAATCTCCAACTGTTCTTCCCTTGTTCGTCTTCGCCTAGAAGATAATTCATTCTCAGGAGAGATCCCTTTAAGATTTAGCCATCTTCCTGGTATCTCATACGTTGATCTGTCAAGAAACAATTTTGTTCGTGGGATTCCTTCAGATATTTTTCAAGCTACTCAACTAGAGTATTTCAATGTCTCTTACAATCTGCAATTAGGAGGCATCATCCCTACACAAGTGTGGTCTTTGCCCCTACTTCAAAATTTTTCAGCATCTTTGTGTGGAATTTCAGGCTATCTTCCTCCATTTGAGTCCTGCAAATCAATCTCAGTTATTGATCTAGATAGGAACAACTTATCAGGAATTATCCCAAACAGTGTTTCCAAATGTCAAGCTCTTGAGAAAATCAAATTATCTAACAACAATCTGACAGGTCATATCCCTGAGGAGCTTGCCAGCATCTCAATTCTTGCTGTAGTAGACCTATCTAACAATAAGTTCAATGGCCCTATACCAGCAAAGTTTGGTAGTTCTTCAAGTTTACAACTTTTCAATGTGTCTTTCAACAATATCTCAGGTTCAATACCCACAGGAGAGTCATTCAAATTAATGGATAGCAGTGCATTTGTTGGAAATTCAGAGCTATGTGGAGCACCTCTGCGACCATGTCCTGATTCAGTTGGAATATTGGGCAGCAAAGGCACATGGAACTGGAAGCTTACACGTATTGTGCTACTCTCTGTAGGGTTGCTAATAATCCTTTTAGGATTGGCTTTTGGAACACTTTATTACAGAAGGGGTGTTAAAAGTCAATGGAAGATGGTCCCATTTGTTGGACTCCCTCAATTCACAGCAAATGATGTTTTGATTAGCTTCAATGCCACAAAACCAACAGAAGTTCCATCACCATCACCTTTAGTTACAAAGGCAGTTCTGCCTACAGGAATAACAGTTTTAGTTAAGAAGATTGAATGGGAAGCAAGGAGCATTAAGGACGTGTCAGAGTTTATAATGCGACTTGGAAATGCAAGGCACAAGAATTTAATCAGATTGTTGGGTTTCTGCCACAACCAGCATCAAGTGTATCTTTTGTACGATTATTTGCCCAGTGGGAATTTGGCTGAGAAAATTGGAATGAAATGGGATTGGGCAGCTAAATTCAGAACAGTGGTTGGAATTGCAAGGGGACTTTGCTTCCTTCACCATCACTGTTACCCTGCTATACCCCATGGAGACTTGAAGTCCAGTAACATTGTATTTGACGAAAATATGGAACCCCATTTGGCAGAATTTGGGTTCAAAAATCTGTTGAAGTTGAGCAAAGGATCATCTCCAACCACAACTAAGTGGGAAACAGAATTCAATGAAATCACCAAAGAGGAACTTTGCATGGATGTCTACAAATTTGGGGAGATAATCCTGGAAATTTTAACTGGGGGAAGGTTGAGAAATGCAGCAGCTAGCATACACAGCAAACCATGGGAGGTTCTTCTAAGAGAAATTTACAATGAGAATGAAGTGAGTTCTGCAAGTTCATTGCAAGAGATTAAACTGGTTCTTGAGGTTGCTATGCTCTGCACTAGAAGCAGGTCGAAGGATAGGCCATCCATGGAAGATGCTCTGAAGGTTTTGTCAGGGTTAAAGGGTCTCGAAGATGGCAGAACTTCAAAAGAAGGGCAATAA 2880 0.4111 MEIFKCLYINLLLTFMLSAVLAIDPYSEALLSLRSELVDSDNSLHDWVVPSGGNLTGKSYACSWIGIKCNKDSTIVTSIDLSMKKLGGLMSGKQFSIFTKLTDLNLSHNLFSGQLPAEIFNLTSLRSLDISRNNFSGHFPGGIPSLQNLVVLDAFSNSFSGQLPAELSQLQYLKVLNLAGSYFKGSIPSEYSSFRSLEFLHLAGNSLTGSIPPELGSLKTVTHMEIGYNFYQGFIPSQLGNMSQLQYLDIAGANLSGTIPKQLSNLTSLQSLFLFRNQLTGSIPSEFSKITPLSDLDLSDNFLSGSIPESFSELKNLRLLSLMYNDMSGSVPEGIAQLPSLETLLIWNNRFSGSLPQSLGRNSKLKWVDVSTNNFIGSIPPDICVSGVLFKLILFSNKFTGGLSSISNCSSLVRLRLEDNSFSGEIPLRFSHLPGISYVDLSRNNFVRGIPSDIFQATQLEYFNVSYNLQLGGIIPTQVWSLPLLQNFSASLCGISGYLPPFESCKSISVIDLDRNNLSGIIPNSVSKCQALEKIKLSNNNLTGHIPEELASISILAVVDLSNNKFNGPIPAKFGSSSSLQLFNVSFNNISGSIPTGESFKLMDSSAFVGNSELCGAPLRPCPDSVGILGSKGTWNWKLTRIVLLSVGLLIILLGLAFGTLYYRRGVKSQWKMVPFVGLPQFTANDVLISFNATKPTEVPSPSPLVTKAVLPTGITVLVKKIEWEARSIKDVSEFIMRLGNARHKNLIRLLGFCHNQHQVYLLYDYLPSGNLAEKIGMKWDWAAKFRTVVGIARGLCFLHHHCYPAIPHGDLKSSNIVFDENMEPHLAEFGFKNLLKLSKGSSPTTTKWETEFNEITKEELCMDVYKFGEIILEILTGGRLRNAAASIHSKPWEVLLREIYNENEVSSASSLQEIKLVLEVAMLCTRSRSKDRPSMEDALKVLSGLKGLEDGRTSKEGQ 959
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi76g00006 959 ProSiteProfiles Protein kinase domain profile. 647 946 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi76g00006 959 Pfam Protein tyrosine and serine/threonine kinase 714 941 IPR001245 GO:0004672|GO:0006468
Gabi76g00006 959 Gene3D Ribonuclease Inhibitor 280 387 IPR032675 -
Gabi76g00006 959 SUPERFAMILY L domain-like 379 622 - -
Gabi76g00006 959 SMART LRR_typ_2 98 122 IPR003591 -
Gabi76g00006 959 SMART LRR_typ_2 433 457 IPR003591 -
Gabi76g00006 959 SMART LRR_typ_2 194 218 IPR003591 -
Gabi76g00006 959 SMART LRR_typ_2 266 289 IPR003591 -
Gabi76g00006 959 SMART LRR_typ_2 338 362 IPR003591 -
Gabi76g00006 959 FunFam Leucine-rich repeat receptor-like protein kinase TDR 682 766 - -
Gabi76g00006 959 SUPERFAMILY RNI-like 78 400 - -
Gabi76g00006 959 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 196 937 - -
Gabi76g00006 959 Gene3D Ribonuclease Inhibitor 388 626 IPR032675 -
Gabi76g00006 959 SUPERFAMILY Protein kinase-like (PK-like) 706 943 IPR011009 -
Gabi76g00006 959 Gene3D Ribonuclease Inhibitor 181 279 IPR032675 -
Gabi76g00006 959 Gene3D Ribonuclease Inhibitor 26 180 IPR032675 -
Gabi76g00006 959 Gene3D Phosphorylase Kinase; domain 1 704 764 - -
Gabi76g00006 959 FunFam Leucine-rich repeat receptor-like protein kinase 26 187 - -
Gabi76g00006 959 Gene3D Transferase(Phosphotransferase) domain 1 765 957 - -
Gabi76g00006 959 Pfam Leucine rich repeat N-terminal domain 28 70 IPR013210 -
Gabi76g00006 959 SMART serkin_6 706 943 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi76g00006 959 ProSitePatterns Serine/Threonine protein kinases active-site signature. 807 819 IPR008271 GO:0004672|GO:0006468
Gabi76g00006 959 FunFam Leucine-rich repeat receptor-like protein kinase TDR 311 624 - -
Gabi76g00006 959 FunFam Leucine-rich repeat receptor-like protein kinase TDR 188 292 - -
Gabi76g00006 959 FunFam Leucine-rich repeat receptor-like protein kinase TDR 767 951 - -
Gabi76g00006 959 Pfam Leucine rich repeat 293 351 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi76g00006 Gabi-Chr76 79200 82313 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi76g00006 13 944 Receptor kinase-like Gene Family AT5G51350 55.085 0.0 956
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Gabi76g00006 PK_Tyr_Ser-Thr 1e-17 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi76g00006 - - aprc:113852384 1648.25