Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi766g00016 ATGGGTAACGCACATGGACGTGGCCATCGCAAACACCGTAATCCCGTTTCTCACAACACCGTTCCTCCGCCCTATAAATACGGTGTTCAGCCACAGCCACAGCCACAGCCACCACCATTACCAATCCCAACCCAAAACGAGGCTACCTCCAATTCCAACATGATCTCTCTTCCTTACGCGCGCGTCGACACCACTCTCCGTTCACTCGCCGGCCAGGCCGAGGGCTTTGGTCGCTCCGCAATCGGTGGCCTTCACGGTCCCCTTTACCATGTCACATCTCTCGAAGATGATGGACCAGGATCACTGCGTGACGCGTGTCGCAGAAAAGAACCATTATGGATTGTGTTTGATGTTTCGGGAACTATTCACCTCTCTTCATACTTGAGTGTGTCATCTCACAAGACCATTGATGGACGCGGCCAAAAGGTTAAACTCACCGGAAAAGGTTTGCGGCTTAAGGAATGTGAACATGTGATAATTTGCAATTTAGTGTTAGAAGGAGGAAGAGGGTCTGATGTGGATGCTATTCAGATTAAACCTAATTCGAAGCATATATGGATTGATCGCTGTAACCTAAGTGATTTTGATGATGGCCTCATTGATATCACACGAGAAAGCACTGACATTACTGTTTCTAGGTGTCAGTTTTCTCAGCATGACAAAACAATGCTTATTGGTGCTGATCCCTCTCATGTTGGTGATAGATGCATGAGGGTTACTATACACCATTGTTTTTTTAATGGGACTCGACAGAGGCATCCTCGTGTTAGATTTGCGAAAGTGCATCTCTACAATAATTACATCAGAGACTGGGGCATATATGCTGTTTGTGCTAGTGTGGAATCCCAGATATTCTCGCAACATAATATTTATGAAGCGGGTCAGAAGAAGGTGGCATTTAAGTATCTTAATGAGAAGGCAGCAGACAAAGAAGCAGAAGCAACTGGTTACATAAGGTCTGAAGGAGACTTATTTTTAAATGGTGCTCAACCAGGGTTAATGACTGAGAACATTGGGTGTAATATGTTTCACCCCAGTGAATACTATCATACATGGACAGTGGAACCTCCAACGGATGATCTAAACCAGGTTCTTCATCACTGCACTGGATGGCAATCTGTTGCAAGGCCGGCAGATCAAACACTTTGCGCTGAATAG 1158 0.456 MGNAHGRGHRKHRNPVSHNTVPPPYKYGVQPQPQPQPPPLPIPTQNEATSNSNMISLPYARVDTTLRSLAGQAEGFGRSAIGGLHGPLYHVTSLEDDGPGSLRDACRRKEPLWIVFDVSGTIHLSSYLSVSSHKTIDGRGQKVKLTGKGLRLKECEHVIICNLVLEGGRGSDVDAIQIKPNSKHIWIDRCNLSDFDDGLIDITRESTDITVSRCQFSQHDKTMLIGADPSHVGDRCMRVTIHHCFFNGTRQRHPRVRFAKVHLYNNYIRDWGIYAVCASVESQIFSQHNIYEAGQKKVAFKYLNEKAADKEAEATGYIRSEGDLFLNGAQPGLMTENIGCNMFHPSEYYHTWTVEPPTDDLNQVLHHCTGWQSVARPADQTLCAE 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi766g00016 385 SUPERFAMILY Pectin lyase-like 70 376 IPR011050 -
Gabi766g00016 385 MobiDBLite consensus disorder prediction 26 44 - -
Gabi766g00016 385 Pfam Pectate lyase 127 290 IPR002022 -
Gabi766g00016 385 Gene3D - 59 360 IPR012334 -
Gabi766g00016 385 PANTHER PECTATE LYASE 18-RELATED 62 330 IPR045032 GO:0030570
Gabi766g00016 385 MobiDBLite consensus disorder prediction 1 16 - -
Gabi766g00016 385 MobiDBLite consensus disorder prediction 1 50 - -
Gabi766g00016 385 SMART amb_all 99 297 IPR002022 -
Gabi766g00016 385 PRINTS Pollen allergen Amb family signature 127 143 IPR018082 -
Gabi766g00016 385 PRINTS Pollen allergen Amb family signature 72 89 IPR018082 -
Gabi766g00016 385 PRINTS Pollen allergen Amb family signature 274 293 IPR018082 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi766g00016 Gabi-Chr766 129643 131488 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi766g00016 96 379 Polysaccharide Lyase AT3G55140 76.056 3.92e-166 465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi766g00016 K01728 - gmx:100814368 638.647