Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi766g00002 ATGATGATGCAATTTGCTCAACCAGAACCAATGATATTTAGGTTTAAGTTTCAAGAATTCCTCACTACCCCACCTCATAAATTTTACATATTCACATTCAACTTCGTAGCCATGATCAAGAGACAGAGAGAAAATGAAGAAAAAGAGAGCATAGAGTTGGCAAATAGTCTGATTCTGCTCTCTCATGTCCAAGAAAACAAGCCCCTTAAGAAAAGTTATGTCCCAGTGGAGTTTGAGTGCAAGACCTGTAACCGCAAGTTCTCATCGTTTCAAGCACTTGGTGGCCACAGGACTAGCCACAAGAAGCCAAAACTTGATGCAGAGGAAAAAGCTAAGAGCTTTGGGAATAAACCCAAAATGCATGAGTGTTCCATTTGTGGTCAAGAATTCTCTTTGGGTCAGGCACTGGGAGGACACATGAGAAGGCATAGGGCTGCCATGAATGAAGGGTTTTCTTCTATAAATCAGGTTATTGCAAAAGCCCCAGTTCTGAAAAGATCTAATAGTAAGAGGGTTATGTCCCTGAAATTGGACCTGAACTTGACACCCTTGGAAAATGACTTGAAGTTGTTGTTTGGAAACAAGGCACCTCAAGTTGATCTTTCTTTGTTCTGA 615 0.4098 MMMQFAQPEPMIFRFKFQEFLTTPPHKFYIFTFNFVAMIKRQRENEEKESIELANSLILLSHVQENKPLKKSYVPVEFECKTCNRKFSSFQALGGHRTSHKKPKLDAEEKAKSFGNKPKMHECSICGQEFSLGQALGGHMRRHRAAMNEGFSSINQVIAKAPVLKRSNSKRVMSLKLDLNLTPLENDLKLLFGNKAPQVDLSLF 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi766g00002 204 ProSitePatterns Zinc finger C2H2 type domain signature. 123 143 IPR013087 -
Gabi766g00002 204 PANTHER ZINC FINGER PROTEIN ZAT5 41 187 - -
Gabi766g00002 204 ProSitePatterns Zinc finger C2H2 type domain signature. 80 100 IPR013087 -
Gabi766g00002 204 SMART c2h2final6 78 100 IPR013087 -
Gabi766g00002 204 SMART c2h2final6 121 143 IPR013087 -
Gabi766g00002 204 Gene3D Classic Zinc Finger 75 143 - -
Gabi766g00002 204 ProSiteProfiles Zinc finger C2H2 type domain profile. 121 148 IPR013087 -
Gabi766g00002 204 ProSiteProfiles Zinc finger C2H2 type domain profile. 78 105 IPR013087 -
Gabi766g00002 204 SUPERFAMILY beta-beta-alpha zinc fingers 78 143 IPR036236 -
Gabi766g00002 204 Pfam C2H2-type zinc finger 121 145 - -
Gabi766g00002 204 Pfam C2H2-type zinc finger 78 103 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi766g00002 Gabi-Chr766 17701 19331 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi766g00002 39 201 C2H2 Transcription Factor Family AT2G37430 50.000 1.89e-48 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gabi766g00002 zf-C2H2_6 9.1e-10 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi766g00002 - - aprc:113870747 275.018