Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi766g00001 ATGAAGAGACAGAGAGATGAAGAAGGAATAGAGACCATAGACTTGGCTAATTGTCTAATGTCGCTCTCTCATCCCCGAGAAAACAAAACGCAGAAACGTTTTGGCCCAGTGGAATTTGAGTGCAACACATGCAACCGCAAGTTCTCGTCGTTTCAAGCCCTCGGTGGCCACAGGTCTAGTCACAAGAAACCGAAACTCGAAACGAAAGAACTCAAAGCACAGACAAAAACTCTGAGCTTTGGGAATAAACACAAAGTGCACGTGTGCTCCATTTGTGGTGAGGAATTCTCTATGGGTCAGGCACTTGGAGGACACATGAGAAGACACAGAATTGCATTCAACGAAGGATTTTCTTCTATAAACCATGTTGTTGTAAAAGTCCCAGTTCTGAAAAGGTCGAATAGTACAAGGGTTATGTGCTTGGACTTGAACTTAACACCTTTGCAGAATGACTTGAAGTTGTTGTTTGGAAACATGGCTCCCAAAGTTTGA 492 0.4329 MKRQRDEEGIETIDLANCLMSLSHPRENKTQKRFGPVEFECNTCNRKFSSFQALGGHRSSHKKPKLETKELKAQTKTLSFGNKHKVHVCSICGEEFSMGQALGGHMRRHRIAFNEGFSSINHVVVKVPVLKRSNSTRVMCLDLNLTPLQNDLKLLFGNMAPKV 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi766g00001 163 SUPERFAMILY beta-beta-alpha zinc fingers 39 109 IPR036236 -
Gabi766g00001 163 ProSitePatterns Zinc finger C2H2 type domain signature. 41 61 IPR013087 -
Gabi766g00001 163 Gene3D Classic Zinc Finger 36 109 - -
Gabi766g00001 163 ProSiteProfiles Zinc finger C2H2 type domain profile. 87 109 IPR013087 -
Gabi766g00001 163 Pfam C2H2-type zinc finger 86 111 - -
Gabi766g00001 163 Pfam C2H2-type zinc finger 39 64 - -
Gabi766g00001 163 PANTHER ZINC FINGER PROTEIN ZAT5 9 150 - -
Gabi766g00001 163 ProSitePatterns Zinc finger C2H2 type domain signature. 89 109 IPR013087 -
Gabi766g00001 163 SMART c2h2final6 39 61 IPR013087 -
Gabi766g00001 163 SMART c2h2final6 87 109 IPR013087 -
Gabi766g00001 163 ProSiteProfiles Zinc finger C2H2 type domain profile. 39 66 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi766g00001 Gabi-Chr766 7850 8356 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi766g00001 1 163 C2H2 Transcription Factor Family AT2G37430 46.821 4.40e-46 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gabi766g00001 zf-C2H2_6 1e-11 CL0361