Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Gabi763g00004 | ATGGCCGTTGTATCCCTCTCTGTGCTCACAGTCACACCTTCTTCCACTTGTTCTTGCTTCAATGGCGGGATCCATCTCCGTTCCCACAAGAGCTTCATTTCAATCCACTCTCCTTCTCCTTTTTCGTCTTTTACCTCAAATTCAAAGCTCTCTGGCAGTGGCAAGCAGCGCTCTCGCACCACCACCACCGTCCTTGCTGCTTCCGCCGACTATTATTCTACTCTCGGAATCCCCAAATCCGCCACCGGCAAGGAAATCAAAGCGGCTTATCGAAGGTTAGCTCGTCAGTACCATCCTGATGTTAACAAGGAACCTGGAGCAACTGAAAAGTTCAAAGAGATTAGTGCTGCGTATGAGGTGTTATCAGATGATAAAAAGAGGGCTTTGTATGATCAATATGGAGAGGCAGGAGTTAAGAGTACAGTTGGAGGAGCATCAAGTGCCTATACGACAAATCCATTTGATTTATTTGAGACATTTTTTGGGCCAAGTATGGGTGGCTTTGCTGGCATGGATCCAGCTGGATTTGGAACACAACGCCGTAGTACTGTAACTAAGGGTGAAGACATCCGGTATGATTTTTCCTTGGACTTTTCTGAGGCAATTTTTGGAACGGAGAAAGAATTTGAGCTTTCCCATCTGGAAACATGTGAAGTCTGTACTGGTACTGGAGCAAAGATAGGCTCCAAGTTGAGAGTATGTTCCACTTGTGGTGGGAGGGGTCAGGTGATGAGGACTGAACAAACACCTTTTGGGTTGTTCTCCCAGGTTTCAGTATGTCCAAACTGTGGAGGGGATGGTGAAGTCATATCTGAATATTGTCGTAAATGTAGTGGCGAAGGACGAATACGGGTTAAGAAAAATATTAAAGTTAGAGTTCCTCCTGGGGTAAGCTCGGGCAGTATTCTGAGAGTTGCTGGGGAGGGTGATGCTGGACCCCGAGGGGGCCCTCCAGGAGATCTTTATGTATATCTTGATGTGGAAGAGATACCAGGAATTCAAAGGGATGACATTAATCTCCGCTCAACAATATCAATCAGTTATCTAGATGCTATACTTGGGGCTGTCGTGAAGGTTAAGACAGTTGAAGGCATTTCTGAACTACAAATACCTCCCGGTACCCAACCTGGAGATGTCCTTGTCCTTGCAAGGAAAGGTGTACCAAAATTAAACAAACCATCAATACGTGGCGACCACTTATTTACGGTTAAAGTTACAATACCAAAACGTATTAGTAAACAGGAGCGTGACGTACTTGAAGAACTTGCTTCTCTAGGTGACACAACGAGCAGTCGTTCAAAATCTCGTCCTAGGACTCACTCTTCCCCAGGAAGTACAGAAGGTCCTGCAACTCAAAGGGCTGAAAGTCCAACAGCAGCAAAAGTTGCAGAAAAAACGGAACAATCGGAAGACCAAAACGATATATGGAATAGATTAAAGGACTTTGCTGGGTCTGTGGCAAATGGAGCGCTTAAGTGGCTGAAAGATAATCTCTAG | 1497 | 0.4536 | MAVVSLSVLTVTPSSTCSCFNGGIHLRSHKSFISIHSPSPFSSFTSNSKLSGSGKQRSRTTTTVLAASADYYSTLGIPKSATGKEIKAAYRRLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRALYDQYGEAGVKSTVGGASSAYTTNPFDLFETFFGPSMGGFAGMDPAGFGTQRRSTVTKGEDIRYDFSLDFSEAIFGTEKEFELSHLETCEVCTGTGAKIGSKLRVCSTCGGRGQVMRTEQTPFGLFSQVSVCPNCGGDGEVISEYCRKCSGEGRIRVKKNIKVRVPPGVSSGSILRVAGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDDINLRSTISISYLDAILGAVVKVKTVEGISELQIPPGTQPGDVLVLARKGVPKLNKPSIRGDHLFTVKVTIPKRISKQERDVLEELASLGDTTSSRSKSRPRTHSSPGSTEGPATQRAESPTAAKVAEKTEQSEDQNDIWNRLKDFAGSVANGALKWLKDNL | 498 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Gabi763g00004 | 498 | PRINTS | DnaJ domain signature | 90 | 105 | IPR001623 | - | |
| Gabi763g00004 | 498 | PRINTS | DnaJ domain signature | 106 | 126 | IPR001623 | - | |
| Gabi763g00004 | 498 | PRINTS | DnaJ domain signature | 72 | 90 | IPR001623 | - | |
| Gabi763g00004 | 498 | PRINTS | DnaJ domain signature | 126 | 145 | IPR001623 | - | |
| Gabi763g00004 | 498 | MobiDBLite | consensus disorder prediction | 424 | 453 | - | - | |
| Gabi763g00004 | 498 | Pfam | DnaJ central domain | 217 | 281 | IPR001305 | GO:0031072|GO:0051082 | |
| Gabi763g00004 | 498 | MobiDBLite | consensus disorder prediction | 423 | 474 | - | - | |
| Gabi763g00004 | 498 | NCBIfam | molecular chaperone DnaJ | 70 | 424 | IPR012724 | GO:0005524|GO:0006457|GO:0009408|GO:0051082 | |
| Gabi763g00004 | 498 | SUPERFAMILY | HSP40/DnaJ peptide-binding domain | 334 | 419 | IPR008971 | GO:0006457|GO:0051082 | |
| Gabi763g00004 | 498 | FunFam | Molecular chaperone Hsp40/DnaJ family protein | 333 | 425 | - | - | |
| Gabi763g00004 | 498 | FunFam | Chaperone protein dnaJ A6 chloroplastic | 67 | 173 | - | - | |
| Gabi763g00004 | 498 | Gene3D | - | 187 | 323 | - | - | |
| Gabi763g00004 | 498 | Pfam | DnaJ C terminal domain | 190 | 408 | IPR002939 | - | |
| Gabi763g00004 | 498 | FunFam | Putative Mitochondrial DnaJ chaperone | 276 | 323 | - | - | |
| Gabi763g00004 | 498 | SUPERFAMILY | Chaperone J-domain | 66 | 175 | IPR036869 | - | |
| Gabi763g00004 | 498 | CDD | DnaJ | 70 | 123 | IPR001623 | - | |
| Gabi763g00004 | 498 | Hamap | Chaperone protein DnaJ [dnaJ]. | 67 | 482 | IPR012724 | GO:0005524|GO:0006457|GO:0009408|GO:0051082 | |
| Gabi763g00004 | 498 | CDD | DnaJ_C | 188 | 411 | - | - | |
| Gabi763g00004 | 498 | FunFam | Chaperone protein dnaJ A6 chloroplastic | 217 | 281 | - | - | |
| Gabi763g00004 | 498 | Gene3D | - | 217 | 281 | - | - | |
| Gabi763g00004 | 498 | SUPERFAMILY | HSP40/DnaJ peptide-binding domain | 185 | 338 | IPR008971 | GO:0006457|GO:0051082 | |
| Gabi763g00004 | 498 | Pfam | DnaJ domain | 70 | 131 | IPR001623 | - | |
| Gabi763g00004 | 498 | SUPERFAMILY | DnaJ/Hsp40 cysteine-rich domain | 204 | 284 | IPR036410 | - | |
| Gabi763g00004 | 498 | Gene3D | - | 333 | 425 | - | - | |
| Gabi763g00004 | 498 | PANTHER | DNAJ HOMOLOG 1, MITOCHONDRIAL-RELATED | 40 | 435 | - | - | |
| Gabi763g00004 | 498 | CDD | DnaJ_zf | 217 | 281 | IPR001305 | GO:0031072|GO:0051082 | |
| Gabi763g00004 | 498 | ProSitePatterns | Nt-dnaJ domain signature. | 111 | 130 | IPR018253 | - | |
| Gabi763g00004 | 498 | Gene3D | DnaJ domain | 67 | 172 | IPR036869 | - | |
| Gabi763g00004 | 498 | ProSiteProfiles | Zinc finger CR-type profile. | 204 | 286 | IPR001305 | GO:0031072|GO:0051082 | |
| Gabi763g00004 | 498 | ProSiteProfiles | dnaJ domain profile. | 70 | 134 | IPR001623 | - | |
| Gabi763g00004 | 498 | SMART | dnaj_3 | 69 | 126 | IPR001623 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Gabi763g00004 | Gabi-Chr763 | 37419 | 45007 | Dispersed/Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Gabi763g00004 | 71 | 133 | C2H2 Transcription Factor Family | AT1G74250 | 49.275 | 1.09e-10 | 62.0 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Gabi763g00004 | K03686 | - | gmx:100798567 | 794.653 |