Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi762g00001 ATGGTTCATAGAAAAACTGAGATGAAATTGGTGAAGAATAAAAGTGCTTTGCAGTGCACTTTTTCCAAGCGTAGGAGTGGCCTTTTTAAGAAAGCAAGTGAGTTGTCAATTCTTTGTGGTGCTATGATGGGTGTCATTGCATTCTCTCCTGGTGGCAAACCCTTCTCTTTTGGTTATCCAACCATTGAGGCTGTGACTAATAAGTTCATTCAACGAGGACCAGGCCAAGGTGAACCTTCAAAAGATGGTGATGTTAACGAGCTTAATCAGAAGGTTGAGGATCTGGTGTACCAGCTGAAGGTGGAGAAGAAGGGGAAGGACATACTTGAAAATGCTCTGAACAGAAACAAGGTCATAGATGTTGAATTCCCAATTGATGATCTTAGTTCAGAGAAGCTTCAAATACTGATGGCTTCGTTGAAAAAGCTCAGAGATGAATTGAAAGAGCTCAGAGATAATTTGAAATTGCCCATGAATGAGACTGATGCAGCATCGACTTCCCCCCAACAGATAGAGGAGGATTTATTCAATCACATAGTTTGGGCTCCTAGAATATTGCGCCCTTGGGGCTTTCTATTTGATTGTATCGAAAGGCCCAATGAATTGGGATTTCCCTATTGGGCCGGGTCATTTCGGGGCAAGCAGATCATTTATGCTTCACCTTGCAGAGAAGTATGA 678 0.4233 MVHRKTEMKLVKNKSALQCTFSKRRSGLFKKASELSILCGAMMGVIAFSPGGKPFSFGYPTIEAVTNKFIQRGPGQGEPSKDGDVNELNQKVEDLVYQLKVEKKGKDILENALNRNKVIDVEFPIDDLSSEKLQILMASLKKLRDELKELRDNLKLPMNETDAASTSPQQIEEDLFNHIVWAPRILRPWGFLFDCIERPNELGFPYWAGSFRGKQIIYASPCREV 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi762g00001 225 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Gabi762g00001 225 FunFam Agamous-like MADS-box protein AGL62 13 78 - -
Gabi762g00001 225 Gene3D - 13 77 IPR036879 GO:0003677|GO:0046983
Gabi762g00001 225 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 57 IPR002100 GO:0003677|GO:0046983
Gabi762g00001 225 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Gabi762g00001 225 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Gabi762g00001 225 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Gabi762g00001 225 Coils Coil 130 160 - -
Gabi762g00001 225 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Gabi762g00001 225 SUPERFAMILY SRF-like 1 72 IPR036879 GO:0003677|GO:0046983
Gabi762g00001 225 PANTHER MADS BOX PROTEIN 4 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi762g00001 Gabi-Chr762 111738 112415 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi762g00001 4 144 Type I MADS-box Gene Family AT5G60440 39.474 1.02e-27 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Gabi762g00001 SRF-TF 3.7e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi762g00001 - - lang:109341334 140.198