Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi761g00013 ATGATGGATGGACGACGGCATTCAGTTGATATTCCTATTTCTAAAACTCTTGGAGCATTGAGGAGAGTCAGGTCATTGAGGGATCCATCAATGAGCAAACTCTCTTCTTTGATTGATAATGTGCACTGGGAGAATGGTTGGGACAATGGGGTTTCTCTGCGGTTTTTGGATGCTACTCGTGCGTTTGATTCTGACAATAATATTGCTTTGAGATCAAAGAATTTAGGTTTTATGGGACAAAGAGAGCATGATGTTGCTGATTTTGTATTGAATTGTGGCCTGTCTAACTCAAGGTTGAAGCCTAGTGAAATCTCATGTCAGAATGACCAACAAAATGATGAACCAGTTTACTCTGATCTGAATCAGCACTGCATTTCTGGAAATAAATCACTAAGCGAAAGCTGTAGTAGTGGGGTTAATGGACTTGATTTGGCTTGTACCGTGCCTCCTAGTAATCATTTCAATGTTTTAGATGATAATGATAATGGATGTGGAATAAGCTGTTGTTGGTCAAAATCACCAAGGTTTAGAGAATCAAATCTTTATAGCGAGATAGAAGACCGTTCCTTGATATTGGACCGGGTTGATGAGAAAGATCTTCATGGACATAGAAGCATGAGACACAATGGTGGTGAAATTAGTCCGAATTTGGAAACTCCTAGAAGTTTGTCTATGAAATTTAGGCCTAAATTGTTTAGTGATTTGGTGGGACAAGATGTCGTAGTAAGGTCTCTTTTGGGTGCAATCTCCAGAGGAAGGATAACAACATTTTATCTCTTTCATGGTCCACGTGGTACAGGCAAGACATCTGCCTCTAGGATATTTGCTGCTGCACTGAATTGTCTCTCTGTTGAGGAGCAAAGACCATGTGGCCTGTGTAGAGAATGCGTTTTATTCTTCTCTGGAAGAAGTAAAGATGTTAAGGAAGTGGATTCTGTGAGAATCAATCGTATAGACCAAGTTAAATCCCTTGTTAAGAATGCATGTATCCCTCCAGTTTACTCACGTTTTAAGGTTTTCATTATTGATGAGTGCCAGTTATTGAATGGGGAGACATGGGCCAGCCTTTCAAATAGCCTAGAGAACCTTTCTCAGCGTGTGGTTTTTGTGATGATTGCTCCTGATTTGGATAAGCTTCCTCGAAGTGCAGTTTCCCGGGCTCAGAGGTATCACTTTCCGAAGATTAAAGATGCTGACATTGCATGCAGATTAGAAAAAATTTGTGCCGAGGAAGGTCTTGATTTTGATCAGGCTGCTTTGAACTTCATTGCTGCTAAATCCTGTGGTTCATTAAGGGATGCAGAAATGATGCTTGATCAGTTGAGTTTGCTCGGTAAAAAGATCACAGTTTCATTAGCCTACGAGCTTACTGGGATCGTTTCTGATGATGAATTGCTTGGTTTGCTGGATCTGGCTTTTTCATCTGACACTTCAAATACAGTTATAAGAGCTCGGGAGCTGATGAGATCAAGGATAGATCCTTTGCAACTTATATCACAGTTGGCAAATCTCATTATGGACATCCTTGCAGGGAAATGTGAAAATGGTGGTGGTTATGAAGTCAGAAGTAGATTTTCTAGAAGATATACCTCTGAAGCTGACCTGCAGAAACTAAGCCATGCATTGAGAATACTTTCTGAAACTGAGAAGCAGTTAAGAATATCGAAGAATCAAACAACATGGTTCACTGTAGCTCTCCTACAGCTAAGCTCTGTAGATTGTCCATCTGTGGATACAAATGATACCAAGTTGTGTTTCAGAGGTGCATGCAATGGAGATGGTGATTACTGCAATGTATCTTCTACAGGGCAGAGTTTAGAGCATCTTGCTCCCGGTCAATGTGATAACAAGTCATATAGATTAAGAGTGCAGGAGGATTGCAAAGGAACATTGCATTCCATATGGTATAAAGCTACAGAGTTGTGTCAATCTAGTCAGCTCAGAACTTTTCTCAGGAAGAAGGGGAAGTTGTCTTCACTTCATGTTGATCGCACAACATCTTGGCTGGCTATTGCCGAGTTGGAGTTCCACCATCGCCACCATGTATCTAAGGCTGAGAATTCATGGAAATTGATCGCAAGTTCTTTGCAGTTCATATTGGGCTGTAACATTGAGTTGAGGATCAATTATGTACCATGTACTTCTGATTCTAAGTACAGGCTGAAGATGTCATCTTTCAGTTTCTTTGATTGTTCACGCAGAATTCAACAGAAATCGTCTAATGAACAAGGAAGTGAATCAGAATATGGTGATTACACCTCTCAAAAACCCATGATGAAGGACAAAACTCTAACTTCTTCCTCTGATTTTGGAACGACTTTGAGAAGTGGTGAAGGGAATTTGCTCAGATCAGGTGAAAGATTATTGAATAGGTCATTTCAAGAGATTATGGGGACATCAAGTTCTGGAATTGATTCCTCTAAGGAAGAAGGATGCAATTGTGTACATCTAGTTCCATCAATCCTCGATTCAGATAATCATTCTAAATGTTTTCCTCAAACTCTCTGGCTTCAAAAGAAGAACCGTTCTTCATAA 2535 0.4016 MMDGRRHSVDIPISKTLGALRRVRSLRDPSMSKLSSLIDNVHWENGWDNGVSLRFLDATRAFDSDNNIALRSKNLGFMGQREHDVADFVLNCGLSNSRLKPSEISCQNDQQNDEPVYSDLNQHCISGNKSLSESCSSGVNGLDLACTVPPSNHFNVLDDNDNGCGISCCWSKSPRFRESNLYSEIEDRSLILDRVDEKDLHGHRSMRHNGGEISPNLETPRSLSMKFRPKLFSDLVGQDVVVRSLLGAISRGRITTFYLFHGPRGTGKTSASRIFAAALNCLSVEEQRPCGLCRECVLFFSGRSKDVKEVDSVRINRIDQVKSLVKNACIPPVYSRFKVFIIDECQLLNGETWASLSNSLENLSQRVVFVMIAPDLDKLPRSAVSRAQRYHFPKIKDADIACRLEKICAEEGLDFDQAALNFIAAKSCGSLRDAEMMLDQLSLLGKKITVSLAYELTGIVSDDELLGLLDLAFSSDTSNTVIRARELMRSRIDPLQLISQLANLIMDILAGKCENGGGYEVRSRFSRRYTSEADLQKLSHALRILSETEKQLRISKNQTTWFTVALLQLSSVDCPSVDTNDTKLCFRGACNGDGDYCNVSSTGQSLEHLAPGQCDNKSYRLRVQEDCKGTLHSIWYKATELCQSSQLRTFLRKKGKLSSLHVDRTTSWLAIAELEFHHRHHVSKAENSWKLIASSLQFILGCNIELRINYVPCTSDSKYRLKMSSFSFFDCSRRIQQKSSNEQGSESEYGDYTSQKPMMKDKTLTSSSDFGTTLRSGEGNLLRSGERLLNRSFQEIMGTSSSGIDSSKEEGCNCVHLVPSILDSDNHSKCFPQTLWLQKKNRSS 844
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi761g00013 844 Gene3D - 396 458 - -
Gabi761g00013 844 MobiDBLite consensus disorder prediction 739 769 - -
Gabi761g00013 844 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 224 444 IPR027417 -
Gabi761g00013 844 CDD HLD_clamp_pol_III_gamma_tau 395 458 IPR045085 -
Gabi761g00013 844 Pfam DNA polymerase III, delta subunit 238 395 - -
Gabi761g00013 844 SUPERFAMILY post-AAA+ oligomerization domain-like 465 568 IPR008921 GO:0003677|GO:0006260
Gabi761g00013 844 FunFam Protein STICHEL-like 1 isoform C 459 573 - -
Gabi761g00013 844 NCBIfam DNA polymerase III subunit gamma/tau 222 569 IPR012763 GO:0003887|GO:0005524|GO:0006260|GO:0009360
Gabi761g00013 844 FunFam DNA polymerase III subunit gamma/tau 396 458 - -
Gabi761g00013 844 SMART AAA_5 254 397 IPR003593 GO:0016887
Gabi761g00013 844 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 223 667 - -
Gabi761g00013 844 Gene3D - 459 573 - -
Gabi761g00013 844 Gene3D - 216 393 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi761g00013 Gabi-Chr761 148282 152549 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi761g00013 213 510 Core DNA Replication Machinery Family AT1G21690 24.919 6.54e-15 75.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi761g00013 - - gmx:100819111 1088.17