Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi760g00003 ATGAACGATCTTATGACCAAGTCATTCACTAGCTACGTTGATTTGAAGAAAGCAGCTATGAAAGATGTGGATTTGGAAGCTGGTCTTCCTCCATCCGATGTGGAACTAACATCTTCCACAACCCACATGAACACTGACATGGGTCTCTTCTTAGAAGAAGCAGAGAAGGTGAAAACAGAAATGGGGTGTCTCCGTGACATACTAGGAAGGCTTCAACAAGCAAACGAAGAGAGCAAGACACTTCACAAGCCCGAAGCACTGAAATCCTTGAGGAACAGAATCAATGCTGACATTGTAACAGTGTTGAAGAAAGCAAGGGTTATGAGGACCCAATTGGAAGAAATGGATCGTGCTAATGATGCTAATAGGAGACTCTCAGGGCTCAAGGATGGAACCCCAGCAATTTATAGAACCAGAATTTCTGTTACCAATGGGTTGAGGAAGAAGCTGAAGGAGCTTATGATGGAGTTTCAGGGTTTAAGGCAAAAGATGATGACTGAGTATAAAGACACTGTGGGGAGAAGGTACTTTACTGTGACTGGGGAATACCCTGATGAAGAGGTTATTGAGAAGATTATATCTAATGGGGATGAAGAGTTTTTGGGGAAAGCTATACAAGAACATGGAAGAGGGAAGGTTCTAGAAACTGTGGTGGAGATTCAGGATAGGTATGATGCTGCTAAAGAGGTTGAGAAGAGTTTGTTGGAGCTTCACCAGGTTTTTTTGGACATGGCTGTTATGGTTGAGGCTCAGGGTGAGAAAATGGATGATATTGAACATCATGTTCTTCATGCTTCTCATTATGTTAAGGATGGTACAAAGAATCTTCAGACTGCAAAGAAGTACCAGAAGAGCAACAGGAAGTGGATGTGTATTGGGATTATACTTTTGCTTATTCTGATTCTTGTTATTGTCATCCCCATTGCCACCAGTCTCAGCAGTTCTTGA 948 0.4219 MNDLMTKSFTSYVDLKKAAMKDVDLEAGLPPSDVELTSSTTHMNTDMGLFLEEAEKVKTEMGCLRDILGRLQQANEESKTLHKPEALKSLRNRINADIVTVLKKARVMRTQLEEMDRANDANRRLSGLKDGTPAIYRTRISVTNGLRKKLKELMMEFQGLRQKMMTEYKDTVGRRYFTVTGEYPDEEVIEKIISNGDEEFLGKAIQEHGRGKVLETVVEIQDRYDAAKEVEKSLLELHQVFLDMAVMVEAQGEKMDDIEHHVLHASHYVKDGTKNLQTAKKYQKSNRKWMCIGIILLLILILVIVIPIATSLSSS 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi760g00003 315 PANTHER SYNTAXIN 59 301 IPR045242 -
Gabi760g00003 315 SMART tSNARE_6 212 279 IPR000727 -
Gabi760g00003 315 CDD SynN 47 204 IPR006011 GO:0016020
Gabi760g00003 315 SUPERFAMILY t-snare proteins 46 272 IPR010989 GO:0016020|GO:0016192
Gabi760g00003 315 Pfam Syntaxin 50 252 IPR006011 GO:0016020
Gabi760g00003 315 SMART SynN_4 42 169 IPR006011 GO:0016020
Gabi760g00003 315 ProSitePatterns Syntaxin / epimorphin family signature. 223 263 IPR006012 GO:0005484|GO:0006886|GO:0016020
Gabi760g00003 315 Gene3D - 47 175 - -
Gabi760g00003 315 Coils Coil 143 163 - -
Gabi760g00003 315 FunFam Syntaxin 132 210 310 - -
Gabi760g00003 315 CDD SNARE_syntaxin1-like 216 278 - -
Gabi760g00003 315 Pfam SNARE domain 254 305 IPR000727 -
Gabi760g00003 315 FunFam Qa-SNARE, Sso1/Syntaxin1-type, SYP12A-group 44 175 - -
Gabi760g00003 315 Gene3D - 213 312 - -
Gabi760g00003 315 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 217 279 IPR000727 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi760g00003 Gabi-Chr760 23996 25121 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi760g00003 1 315 SNARE and Associated Proteins AT1G08560 66.981 4.23e-139 394
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi760g00003 K08486 - qsa:O6P43_006135 550.436