Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi759g00028 ATGGCGGTGGCGAAAGGAAAAGAGAAAGATGATGAGGTTGTTCAAAACAGTGGGAAGAGGCTGAAATGTATGAGGAATGAACAAGAGGGTGTTGAAGCAGAAGAAGACATGGCAGGAGAAGAGGAAACTGAGCTTCCCATGAAGCCAGGGATGTTCTTCTATCCAACCACAGCAACCTCCTTTGTTGTTTCAGATGCCCTTGAACCCGACTTCCCCATCATCTATGTCAATAAGGTCTTTGAACTCTTCACTGGCTATCGTGCTGACGAGGCCCTCGGTCGCAACTGTCGGTTCTTACAATATAGGGATCCTCGAGCTCAGAGGCGGCACCCTTTGGTGGATCCTGTTGTTGTGTCCGAGATTAGAAGATGTCTTGAGGAAGGTATTGAGTTCCAAGGCGAACTTCTGAATTTCAGGAAGGATGGTACTCCTTTAGTGAACAGATTGAGACTTGCACCAATTCATGATGATGATGGAACTGTGACACACATAATAGGTATCCAACTATTTTCTGAGGCAAATATAGATCTGAACCGTGTATCATATCCAGTTTTCAAAGAAACTTGCAATCAAGATTTTGATGAGAAAGGTAAATATTCTAAGAGTGGACAACCATTCTACCGTCAGCATCAAGAGATGTGCGGTATTCTTCAGCTTTCTGATGAAGTCTTGGCTCACAACATTTTGTCACGTTTGACACCAAGGGATGTTGCATCCATTGGGTCTGTATGCACGAGGATCCGTCAATTAACAAAGAATGAGCATGTTAGGAAGATGGTATGTCAAAATGCATGGGGCAAAGAAGTGACAGGTACATTGGAACTGATGACCAAGAAGTTGGGATGGGGTCGTCTGACTAGGGAGCTTACGACTCTCGAGGCTGTTTGTTGGAGAAAAATGACAGTTGGAGGTGCAGTGGAGCCATCACGCTGCAATTTCAGCGCTTGTGCTGCTGGAAATCGGCTTGTATTATTTGGAGGCGAGGGAGTGGATATGCAACCAATGGATGACACTTTTGTTCTAAACCTTGATTCTAAAAATCCAGAATGGCGAAGGATTAGCGTGAAATCATCCCCACCTGGAAGGTGGGGCCACACTCTCTCATGCTTAAATGGTTCTTGGTTGGTGGTTTTTGGTGGATGTGGTAGGCAAGGATTGCTCAATGATGTGTTTGTGCTTGATTTGGATGCTCAACAGCCAACTTGGAAGGAAGTCTTTGGTGGAGCCCCACCGCTTCCTAGATCTTGGCACAGCTCTTGCACAATTGAAGGTTCCAAATTGGTTGTCTCAGGTGGGTGCACAGATGCTGGGGTACTTCTTAGTGACACATATTTACTGGACCTCACAACAGATAATCCAACATGGAGAGAAATTCCAACTTCATGGCCTTCACGGTTGGGGCATTCACTCTCGGTCTATGGGAGGACAAAAATTCTAATGTTTGGAGGACTTGCCAAGAGTGGACACTTAAGATTACGATCAGGTGAGGCTTATACAATTGATTTAGAAGATGAACAACCACAATGGAGGCAAGTAGAATATAGTGCATTCACGGGATTAGCAAGTCAAAGTGCTGTTGTTCCTCCTCCTAGACTAGATCATGTTGCTGTCAGCATGCCTTGTGGGAGGATAATTATATTTGGAGGTTCCATTGCAGGTCTTCACTCACCATCTCAGCTCTTTCTCTTGGACCCTTCTGAAGAGAAACCATCCTGGAGGATCCTCAATGTTCCAGGGTCACCACCTAAATTTGCTTGGGGTCATAGCACTTGTGTGGTTGGAGGGACTAGGGTCTTGGTATTGGGTGGACATACTGGAGAGGAATGGATACTCAATGAGTTGCATGAGTTATGCTTGGCAAGCAGACAGGACTCTGACCTGTGA 1884 0.4549 MAVAKGKEKDDEVVQNSGKRLKCMRNEQEGVEAEEDMAGEEETELPMKPGMFFYPTTATSFVVSDALEPDFPIIYVNKVFELFTGYRADEALGRNCRFLQYRDPRAQRRHPLVDPVVVSEIRRCLEEGIEFQGELLNFRKDGTPLVNRLRLAPIHDDDGTVTHIIGIQLFSEANIDLNRVSYPVFKETCNQDFDEKGKYSKSGQPFYRQHQEMCGILQLSDEVLAHNILSRLTPRDVASIGSVCTRIRQLTKNEHVRKMVCQNAWGKEVTGTLELMTKKLGWGRLTRELTTLEAVCWRKMTVGGAVEPSRCNFSACAAGNRLVLFGGEGVDMQPMDDTFVLNLDSKNPEWRRISVKSSPPGRWGHTLSCLNGSWLVVFGGCGRQGLLNDVFVLDLDAQQPTWKEVFGGAPPLPRSWHSSCTIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDNPTWREIPTSWPSRLGHSLSVYGRTKILMFGGLAKSGHLRLRSGEAYTIDLEDEQPQWRQVEYSAFTGLASQSAVVPPPRLDHVAVSMPCGRIIIFGGSIAGLHSPSQLFLLDPSEEKPSWRILNVPGSPPKFAWGHSTCVVGGTRVLVLGGHTGEEWILNELHELCLASRQDSDL 627
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi759g00028 627 CDD PAS 69 167 IPR000014 -
Gabi759g00028 627 Pfam Galactose oxidase, central domain 424 473 - -
Gabi759g00028 627 Pfam Galactose oxidase, central domain 375 422 - -
Gabi759g00028 627 SUPERFAMILY F-box domain 210 266 IPR036047 GO:0005515
Gabi759g00028 627 PANTHER BACTERIOOPSIN TRANSCRIPTIONAL ACTIVATOR 41 621 - -
Gabi759g00028 627 MobiDBLite consensus disorder prediction 1 20 - -
Gabi759g00028 627 Gene3D - 289 510 IPR015915 GO:0005515
Gabi759g00028 627 SMART pac_2 132 173 IPR001610 -
Gabi759g00028 627 Gene3D PAS domain 54 179 - -
Gabi759g00028 627 Pfam Kelch motif 532 579 IPR011498 GO:0005515
Gabi759g00028 627 NCBIfam PAS domain S-box protein 72 167 IPR000014 -
Gabi759g00028 627 SUPERFAMILY Kelch motif 297 515 IPR015915 GO:0005515
Gabi759g00028 627 Pfam PAS domain 68 167 IPR000014 -
Gabi759g00028 627 Pfam F-box domain 216 253 IPR001810 GO:0005515
Gabi759g00028 627 Gene3D - 511 626 IPR015915 GO:0005515
Gabi759g00028 627 FunFam Putative LOV domain-containing protein 287 490 - -
Gabi759g00028 627 SUPERFAMILY PYP-like sensor domain (PAS domain) 68 168 IPR035965 -
Gabi759g00028 627 ProSiteProfiles PAS repeat profile. 73 128 IPR000014 -
Gabi759g00028 627 FunFam Putative LOV domain-containing protein 491 623 - -
Gabi759g00028 627 Pfam Galactose oxidase, central domain 310 360 - -
Gabi759g00028 627 SUPERFAMILY Kelch motif 514 618 IPR015915 GO:0005515
Gabi759g00028 627 FunFam Adagio protein 1 49 179 - -
Gabi759g00028 627 CDD F-box_AtADO-like 215 261 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi759g00028 Gabi-Chr759 156845 159927 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi759g00028 17 181 AGC Kinase Gene Family AT5G58140 30.978 3.47e-15 77.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi759g00028 K12116 - gmx:100301889 1183.7