Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi759g00027 ATGGCGGTGGCGAAAGGAAAAGAGAAAGATGATGAGGTTGTTCAAAACAGTGGGAAGAGGCTGAAATGTATGAGGAATGAACAAGAGGGTGTTGAAGCAGAAGAAGACATGGCAGGAGAAGAGGAAACTGAGCTTCCCATGAAGCCAGGGATGTTCTTCTATCCAACCACAGCAACCTCCTTTGTTGTTTCAGATGCCCTTGAACCCGACTTCCCCATCATCTATGTCAATAAGGTCTTTGAACTCTTCACTGGCTATCGTGCTGACGAGGCCCTCGGTCGCAACTGGGATCCTCGAGCTCAGAGGCGGCACCCTTTGGTGGATCCTGTTGTTGTGTCCGAGATTAGAAGATGTCTTGAGGAAGGTATTGAGTTCCAAGGCGAACTTCTGAATTTCAGGAAGGATGGTACTCCTTTAGTGAACAGATTGAGACTTGCACCAATTCATGATGATGATGGAACTGTGACACACATAATAGGTATCCAACTATTTTCTGAGGCAAATATAGATCTGAACCGTGTATCATATCCAGTTTTCAAAGAAACTTGCAATCAAGATTTTGATGAGAAAGGTAAATATTCTAAGAGTGGACAACCATTCTACCGTCAGCATCAAGAGATGTGCGGTATTCTTCAGCTTTCTGATGAAGTCTTGGCTCACAACATTTTGTCACGTTTGACACCAAGGGATGTTGCATCCATTGGGTCTGTATGCACGAGGATCCGTCAATTAACAAAGAATGAGCATGTTAGGAAGATGGTATGTCAAAATGCATGGGGCAAAGAAGTGACAGGTACATTGGAACTGATGACCAAGAAGTTGGGATGGGGTCGTCTGACTAGGGAGCTTACGACTCTCGAGGCTGTTTGTTGGAGAAAAATGACAGTTGGAGGTGCAGTGGAGCCATCACGCTGCAATTTCAGCGCTTGTGCTGCTGGAAATCGGCTTGTATTATTTGGAGGCGAGGGAGTGGATATGCAACCAATGGATGACACTTTTGTTCTAAACCTTGATTCTAAAAATCCAGAATGGCGAAGGATTAGCGTGAAATCATCCCCACCTGGAAGGTGGGGCCACACTCTCTCATGCTTAAATGGTTCTTGGTTGGTGGTTTTTGGTGGATGTGGTAGGCAAGGATTGCTCAATGATGTGTTTGTGCTTGATTTGGATGCTCAACAGCCAACTTGGAAGGAAGTCTTTGGTGGAGCCCCACCGCTTCCTAGATCTTGGCACAGCTCTTGCACAATTGAAGGTTCCAAATTGGTTGTCTCAGGTGGGTGCACAGATGCTGGGGTACTTCTTAGTGACACATATTTACTGGACCTCACAACAGATAATCCAACATGGAGAGAAATTCCAACTTCATGGCCTTCACGGTTGGGGCATTCACTCTCGGTCTATGGGAGGACAAAAATTCTAATGTTTGGAGGACTTGCCAAGAGTGGACACTTAAGATTACGATCAGGTGAGGCTTATACAATTGATTTAGAAGATGAACAACCACAATGGAGGCAAGTAGAATATAGTGCATTCACGGGATTAGCAAGTCAAAGTGCTGTTGTTCCTCCTCCTAGACTAGATCATGTTGCTGTCAGCATGCCTTGTGGGAGGATAATTATATTTGGAGGTTCCATTGCAGGTCTTCACTCACCATCTCAGCTCTTTCTCTTGGACCCTTCTGAAGAGAAACCATCCTGGAGGATCCTCAATGTTCCAGGGTCACCACCTAAATTTGCTTGGGGTCATAGCACTTGTGTGGTTGGAGGGACTAGGGTCTTGGTATTGGGTGGACATACTGGAGAGGAATGGATACTCAATGAGTTGCATGAGTTATGCTTGGCAAGCAGACAGGACTCTGACCTGTGA 1866 0.4561 MAVAKGKEKDDEVVQNSGKRLKCMRNEQEGVEAEEDMAGEEETELPMKPGMFFYPTTATSFVVSDALEPDFPIIYVNKVFELFTGYRADEALGRNWDPRAQRRHPLVDPVVVSEIRRCLEEGIEFQGELLNFRKDGTPLVNRLRLAPIHDDDGTVTHIIGIQLFSEANIDLNRVSYPVFKETCNQDFDEKGKYSKSGQPFYRQHQEMCGILQLSDEVLAHNILSRLTPRDVASIGSVCTRIRQLTKNEHVRKMVCQNAWGKEVTGTLELMTKKLGWGRLTRELTTLEAVCWRKMTVGGAVEPSRCNFSACAAGNRLVLFGGEGVDMQPMDDTFVLNLDSKNPEWRRISVKSSPPGRWGHTLSCLNGSWLVVFGGCGRQGLLNDVFVLDLDAQQPTWKEVFGGAPPLPRSWHSSCTIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDNPTWREIPTSWPSRLGHSLSVYGRTKILMFGGLAKSGHLRLRSGEAYTIDLEDEQPQWRQVEYSAFTGLASQSAVVPPPRLDHVAVSMPCGRIIIFGGSIAGLHSPSQLFLLDPSEEKPSWRILNVPGSPPKFAWGHSTCVVGGTRVLVLGGHTGEEWILNELHELCLASRQDSDL 621
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi759g00027 621 FunFam Putative LOV domain-containing protein 485 617 - -
Gabi759g00027 621 Pfam F-box domain 210 247 IPR001810 GO:0005515
Gabi759g00027 621 NCBIfam PAS domain S-box protein 72 161 IPR000014 -
Gabi759g00027 621 MobiDBLite consensus disorder prediction 1 20 - -
Gabi759g00027 621 SUPERFAMILY F-box domain 204 260 IPR036047 GO:0005515
Gabi759g00027 621 Gene3D - 505 620 IPR015915 GO:0005515
Gabi759g00027 621 ProSiteProfiles PAS repeat profile. 73 122 IPR000014 -
Gabi759g00027 621 PANTHER BACTERIOOPSIN TRANSCRIPTIONAL ACTIVATOR 41 615 - -
Gabi759g00027 621 SUPERFAMILY Kelch motif 508 612 IPR015915 GO:0005515
Gabi759g00027 621 SUPERFAMILY PYP-like sensor domain (PAS domain) 68 162 IPR035965 -
Gabi759g00027 621 Pfam Galactose oxidase, central domain 369 416 - -
Gabi759g00027 621 Pfam Galactose oxidase, central domain 418 467 - -
Gabi759g00027 621 CDD F-box_AtADO-like 209 255 - -
Gabi759g00027 621 FunFam Putative LOV domain-containing protein 281 484 - -
Gabi759g00027 621 Pfam Galactose oxidase, central domain 304 354 - -
Gabi759g00027 621 SMART pac_2 126 167 IPR001610 -
Gabi759g00027 621 CDD PAS 69 161 IPR000014 -
Gabi759g00027 621 Gene3D PAS domain 54 173 - -
Gabi759g00027 621 Pfam Kelch motif 526 573 IPR011498 GO:0005515
Gabi759g00027 621 Gene3D - 283 504 IPR015915 GO:0005515
Gabi759g00027 621 SUPERFAMILY Kelch motif 291 509 IPR015915 GO:0005515
Gabi759g00027 621 Pfam PAS domain 68 161 IPR000014 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi759g00027 Gabi-Chr759 156845 159927 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi759g00027 17 175 AGC Kinase Gene Family AT5G58140 29.213 3.78e-11 64.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi759g00027 K12116 - gmx:100301889 1160.59