Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi759g00018 ATGTCATCACAAACCTCGGTTCCTCAGACCCACGCGCCGCTCCTTCGCCCCCGTCGCGTAGGCTCCGATGCCGCCCGCACCCCCATCCTCGCGCTCATTCTTGGCCGCCGTGGCCCTTCCCTGATGGTCCGGGAGACGGCGGCGCGTGAGCTGGATGAGCGGCGGGCGGACTGGGGTTACTCGAAGCCTGTGGTGGCGCTCGACATGACGTGGAACATGGCCTTCGTGATGGTCTCGGCTGTGATGTTGGGTTGCACACTCGATGAGAAGCCGAACACTCCGATCCGGTTGTGGATCGGCGCGTACGCGGTGCAGTGCCTGGTTCACGTGGTTCTGGTGTGGCTTGAATACAGGAGGAGGAATGGAAACTCTGGGAGGGCAAGGGATGAGGAATTTGGTAACCCTGAGAACGACGTCAATGACAGTGAGGACGACGATCTACGACTCAGATTGACCAAACAATGTGCATCGTTTAATACCATGCTTTCATTGCTTTGGTGGGTGGTGGGCTTTTACTGGGTTGTCTCTGGTGGTGATATTCTTCTGCAAGATGCTCCACGTTTGTACTGGTTGGCTGTTGTCTTTCTGGCATTTGATGTCTTCTTTGCCATCTTTTGTGTTGTTTTGGCATGCTTTATTGGCATTGCCCTCTGTTGTTGTTTACCCTGCATTATCGCTGTTCTCTATGCTGTTGCAGGACAGGATGGTGCATCAGAATCAGATCTCAGTATGCTTCCAAAATACAGATTTCAAATGTTAAACAATGAAGAAACACCTAGTGAGGGAGGTGGGTCAATGATTCCCATAGAATCCACCAGTGATTACTTGACAAATGACCGAATACTTTCACCTGAAGATGCGGAATGCTGTATATGCATCTGTTCTTACGAGGATGGAGCAGAACTCCATACTCTTCCTTGCAACCATCATTTCCATACTACATGCATAGTGAAATGGTTAAAGATGAATGCAACTTGTCCACTTTGTAAGTACAATATTCAAAAAGGGAATGAGCAGGTGTGA 1023 0.5024 MSSQTSVPQTHAPLLRPRRVGSDAARTPILALILGRRGPSLMVRETAARELDERRADWGYSKPVVALDMTWNMAFVMVSAVMLGCTLDEKPNTPIRLWIGAYAVQCLVHVVLVWLEYRRRNGNSGRARDEEFGNPENDVNDSEDDDLRLRLTKQCASFNTMLSLLWWVVGFYWVVSGGDILLQDAPRLYWLAVVFLAFDVFFAIFCVVLACFIGIALCCCLPCIIAVLYAVAGQDGASESDLSMLPKYRFQMLNNEETPSEGGGSMIPIESTSDYLTNDRILSPEDAECCICICSYEDGAELHTLPCNHHFHTTCIVKWLKMNATCPLCKYNIQKGNEQV 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi759g00018 340 MobiDBLite consensus disorder prediction 124 143 - -
Gabi759g00018 340 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 267 339 IPR013083 -
Gabi759g00018 340 MobiDBLite consensus disorder prediction 1 20 - -
Gabi759g00018 340 FunFam E3 ubiquitin protein ligase RIE1 269 337 - -
Gabi759g00018 340 CDD RING-H2_PA-TM-RING 288 330 - -
Gabi759g00018 340 SUPERFAMILY RING/U-box 279 334 - -
Gabi759g00018 340 Pfam Ring finger domain 288 330 IPR001841 -
Gabi759g00018 340 SMART ring_2 289 329 IPR001841 -
Gabi759g00018 340 PANTHER TARGET OF ERK KINASE MPK-1 35 338 - -
Gabi759g00018 340 ProSiteProfiles Zinc finger RING-type profile. 289 330 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi759g00018 Gabi-Chr759 124136 128080 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi759g00018 10 339 C3H Transcription Factor Family AT1G68070 67.964 1.11e-171 479