Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi759g00017 ATGTCATCACAAACCTCGGTTCCTCAGACCCACGCGCCGCTCCTTCGCCCCCGTCGCGTAGGCTCCGATGCCGCCCGCACCCCCATCCTCGCGCTCATTCTTGGCCGCCGTGGCCCTTCCCTGATGGTCCGGGAGACGGCGGCGCGTGAGCTGGATGAGCGGCGGGCGGACTGGGGTTACTCGAAGCCTGTGGTGGCGCTCGACATGACGTGGAACATGGCCTTCGTGATGGTCTCGGCTGTGATGTTGGGTTGCACACTCGATGAGAAGCCGAACACTCCGATCCGGTTGTGGATCGGCGCGTACGCGGTGCAGTGCCTGGTTCACGTGGTTCTGGTGTGGCTTGAATACAGGAGGAGGAATGGAAACTCTGGGAGGGCAAGGGATGAGGAATTTGGTAACCCTGAGAACGACGTCAATGACAGTGAGGACGACGATATTGGAGTTGGAACCTCCGGGAATTCCTCTCGCTCTGGATTGACCAAACAATGTGCATCGTTTAATACCATGCTTTCATTGCTTTGGTGGGTGGTGGGCTTTTACTGGGTTGTCTCTGGTGGTGATATTCTTCTGCAAGATGCTCCACGTTTGTACTGGTTGGCTGTTGTCTTTCTGGCATTTGATGTCTTCTTTGCCATCTTTTGTGTTGTTTTGGCATGCTTTATTGGCATTGCCCTCTGTTGTTGTTTACCCTGCATTATCGCTGTTCTCTATGCTGTTGCAGGACAGGATGGTGCATCAGAATCAGATCTCAGTATGCTTCCAAAATACAGATTTCAAATGTTAAACAATGAAGAAACACCTAGTGAGGGAGGTGGGTCAATGATTCCCATAGAATCCACCAGTGATTACTTGACAAATGACCGAATACTTTCACCTGAAGATGCGGAATGCTGTATATGCATCTGTTCTTACGAGGATGGAGCAGAACTCCATACTCTTCCTTGCAACCATCATTTCCATACTACATGCATAGTGAAATGGTTAAAGATGAATGCAACTTGTCCACTTTGTAAGTACAATATTCAAAAAGGGAATGAGCAGGTGTGA 1050 0.5038 MSSQTSVPQTHAPLLRPRRVGSDAARTPILALILGRRGPSLMVRETAARELDERRADWGYSKPVVALDMTWNMAFVMVSAVMLGCTLDEKPNTPIRLWIGAYAVQCLVHVVLVWLEYRRRNGNSGRARDEEFGNPENDVNDSEDDDIGVGTSGNSSRSGLTKQCASFNTMLSLLWWVVGFYWVVSGGDILLQDAPRLYWLAVVFLAFDVFFAIFCVVLACFIGIALCCCLPCIIAVLYAVAGQDGASESDLSMLPKYRFQMLNNEETPSEGGGSMIPIESTSDYLTNDRILSPEDAECCICICSYEDGAELHTLPCNHHFHTTCIVKWLKMNATCPLCKYNIQKGNEQV 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi759g00017 349 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 276 348 IPR013083 -
Gabi759g00017 349 FunFam E3 ubiquitin protein ligase RIE1 278 346 - -
Gabi759g00017 349 CDD RING-H2_PA-TM-RING 297 339 - -
Gabi759g00017 349 MobiDBLite consensus disorder prediction 124 160 - -
Gabi759g00017 349 MobiDBLite consensus disorder prediction 1 20 - -
Gabi759g00017 349 SUPERFAMILY RING/U-box 288 343 - -
Gabi759g00017 349 PANTHER TARGET OF ERK KINASE MPK-1 35 347 - -
Gabi759g00017 349 SMART ring_2 298 338 IPR001841 -
Gabi759g00017 349 ProSiteProfiles Zinc finger RING-type profile. 298 339 IPR001841 -
Gabi759g00017 349 Pfam Ring finger domain 297 339 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi759g00017 Gabi-Chr759 124136 128080 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi759g00017 10 348 C3H Transcription Factor Family AT1G68070 67.055 1.69e-169 474