Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi759g00005 ATGGCTACTTCGAAGGCAGTAATGTCTTCTTTGACCCACTTGCGTCCGCTAACATGCGCCGCTTCGGCATCAGCATCACGACTAGTGCCGCAGCCACCTGACCTGATAAAGTGGGTAACGAGAGAAGGTGGGTTCGTGCACCGTGCTGTGAAGATAGCACAACATGACTCCAATGGTTTTGGTCTGGGACTAGTCGCTAAGGAAGAAATCCCAAGGGGCAGTGACCTTATTGTTCTCCCTCACCACCTTCCCTTGCACTTTACCTCTCAAGACTCTCTCTTACTTGAATTGGCGCGCCAAATTCCTGAGGAACTATGGGCGATGAAACTGGGTCTGAAGCTTCTGCAAGAAAGAGCAAAAGTTGGATCATTTTGGTGGCCATATATCGGCAATCTCCCAGAAACATACAGTGTGCCTATCTTCTTTCCTGGGGAAGACATAAAGAACTTGCAGTACGCTCCTCTTCTTCACCAGGTAAACAAAAGATGCCGGTTTCTTCTTGATTTTGATCGAGAAGTCAAGCGTGCCTTAGTCAGTCTTACACCAGATAAGCATCCTTTTGGTGACCAAGAAGTAGATGCATCTTCTATCGGATGGGCGATGTCAGCAGTCTCATCTAGAGCATTCCGGTTATATGGTAACAAGCATCCAAATGGGGTACACACCGACATACCCATGATGCTCCCTCTAATTGATATGTGCAATCATAGTTTCAATCCCAATGCTAGAATTGTTCAGGAACAAGATACTGATAGCATGAAGATGCAAGTGAAGGTTGTGGCTGAGACAGCAATTAAAGAAAATGATCCTTTATTACTCTGCTATGGCTGTTTAAGCAATGATCTTTTCCTTCTTGATTACGGATTTGTGATACACTCAAACCCATATGACTGTATTGAGCTCAAATATGATGGTGCTCTTTTGGATGCTGCAAGCATGGCAGCTGGAGTTTCTTCACCAAGCTTCTCGTCACCTGCTCCATGGCAGGAACTGATCTTATCTCAGTTAAATCTGGCTGGAGAAGCTCCAGATCTCAAGGTGAGCTTAGGTGGTCAAGAAATAGTAGAGGGCCGCTTGTTGGCTGCATTGAGAGTACTCCTAGCAAGTAATATGGAAACTGTACAGAAGTATGACCTCGACACACTCAAGTCTTTAGATGCTGAGGCTCCTCTTGGTGTTGCAAATGACATAGCTGTATTTCGTACCCTAATTGCTGTGTGTGTCATTGCACTGGAACACTTTCCAACCAAAATAATGGATGATGAATCACTGTTGAAGCAGGGTGCTTCTGGTTCAACCGAGTTAGCCATTCAGTTCAGAATCCAAAAGAAATCTGTGATTATAGATGTAATGAGAAATCTCTCAAGGAGGGTAAAGCTTCTCTCATCAAAGGAAACAGCGACTGCCGAATGCTAA 1416 0.4484 MATSKAVMSSLTHLRPLTCAASASASRLVPQPPDLIKWVTREGGFVHRAVKIAQHDSNGFGLGLVAKEEIPRGSDLIVLPHHLPLHFTSQDSLLLELARQIPEELWAMKLGLKLLQERAKVGSFWWPYIGNLPETYSVPIFFPGEDIKNLQYAPLLHQVNKRCRFLLDFDREVKRALVSLTPDKHPFGDQEVDASSIGWAMSAVSSRAFRLYGNKHPNGVHTDIPMMLPLIDMCNHSFNPNARIVQEQDTDSMKMQVKVVAETAIKENDPLLLCYGCLSNDLFLLDYGFVIHSNPYDCIELKYDGALLDAASMAAGVSSPSFSSPAPWQELILSQLNLAGEAPDLKVSLGGQEIVEGRLLAALRVLLASNMETVQKYDLDTLKSLDAEAPLGVANDIAVFRTLIAVCVIALEHFPTKIMDDESLLKQGASGSTELAIQFRIQKKSVIIDVMRNLSRRVKLLSSKETATAEC 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi759g00005 471 Pfam Rubisco LSMT substrate-binding 325 446 IPR015353 -
Gabi759g00005 471 CDD SET_LSMT 51 290 - -
Gabi759g00005 471 FunFam SET domain containing protein 312 465 - -
Gabi759g00005 471 FunFam Histone-lysine N-methyltransferase setd3 3 289 - -
Gabi759g00005 471 SUPERFAMILY SET domain 30 294 IPR046341 -
Gabi759g00005 471 Gene3D set domain protein methyltransferase, domain 1 5 289 - -
Gabi759g00005 471 ProSiteProfiles SET domain profile. 50 276 IPR001214 GO:0005515
Gabi759g00005 471 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 33 433 - -
Gabi759g00005 471 Pfam SET domain 61 276 IPR001214 GO:0005515
Gabi759g00005 471 SMART set_7 48 282 IPR001214 GO:0005515
Gabi759g00005 471 Gene3D - 326 468 IPR036464 -
Gabi759g00005 471 SUPERFAMILY RuBisCo LSMT C-terminal, substrate-binding domain 286 465 IPR036464 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi759g00005 Gabi-Chr759 44583 47599 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Gabi759g00005 SET 1.9e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi759g00005 - - gmx:100778387 800.431