LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gabi750g00001	ATGTGGAGATTTAAGCCATTCGTGCACAAAGAGCCAACTGGTCTTGAAGGCCGCTCTATAGATGTTGGCAAGCTTAAAATAAATGTGCACAAGGCCATTGCTGAAGGAGGGTTCTCATGTGTCTACTTAGCTCGTGATGTTGTACATATGTCAAAGCAATATGCTCTGAAGCATATAATATGCAATGATGAAGAATCACTTGGATTGGTAAAGAATGAGATATCTGTGATGAAGTTGCTGGTAGGACATCCCAATGTCGTAACACTTCATGCACATACAATCTTTGATATGGGTAGGACAAAAGAGGCATTCCTTGTGATGGAATTTTGTGAGAAATCTCTGGTTAATGTGCTTGAGAGCCGAGGAGCTGGTTATTTTGATGAGAAACAGGTTCTGTTAATCTTCAGGGATGTGTGTAGTGCAGTTTTTGCCATGCACTGCCAATCCCCACCTATTGCTCACCGAGACTTGAAAGCTGAGAATATTTTGTTAGGTTCAGATGGTTTATGGAAGTTATGTGATTTTGGAAGCACTTCTACCAATCACAAACGTTTTGAGAAGCCAGAAGAAATGGGGATTGAGGAAGACAATATCAGGAAGTACACAACCCCTGCCTACAGGGCCCCCGAGATGTGGGATCTGTTCCTGAGAGAAGTCATTAATGAAAAAGTGGACATATGGGCACTCGGGTGTCTCCTTTTTCGCATATGCTACTTCAAAAGTGCATTTGATGGGGAATCAAAGCTCCAAGTGTTAAATGGAAACTACCGCATTCCTGATTTACCTAAATACACTTCATCTGTCACGGACTTAATCAGAGACATGCTTCAAGCAAAACCAGATGACAGACCAGATATCACGCAGGTTTGGTTTCGTATTAATGAGCAGCTACCTATTAATTTGCAGAAGTCATTACCTGACAGGCCACCTGAATCGCCCTCTTCCAACAATCACGAAGGTGCTTCGATGTCCACAAACAAATCACCTCCAATGCCACGTAGGAATCCACCTCCTCCACCTTCATCTGGAGAACCAAAAACTACACCACAGCCATCCCTTGCTTCTAGAGGAGGGGAAAGTGGTGGGCAGCTTGGTGCTTTCTGGTCCACTTTGCATGCAAAGGATTCAGTTGTCCCTGAAGAAAAGAGCAAACCTATATATGATGAAGAACCATCTAGCCTCCACATGTCATTGAAACATGATAGAATTCGTCCAGACAATGATCAATTGCCCAAAAATTTTAGTGCTAACAAAGTGGTTAACGCACAAACTCGTACTGTAAAGAGCAGTGTGCATGGAAAATTACACAAGCCTGATTCTGTATCTTCCAAGGACTTTGAAATAAATTTTTTTCAGGATAAAGATCATGCAAGTGGGGGGAGAATATCTAGTATGGAGAATACAACTAACTTTCAAGACCAGGCTTTTAATACTTTTGTTGCAGAATTCGATACCACTAAGCTCAACTCTGGACTTGGTAACAAATCTGAAAGGGAAGAAGCATTAGAGGCTGAGGTGGAGAAACTCAGAGAGCAGCTGAAGGAAACTAACTTGGAGAAAGCTGAAATAACTTCAAAGTATGAAAAGCTCTCTGCCATCTGCCGATCACAGAGGCAAGAATTGCAGGATCTCAAGCAAGCACTTGCAGCAAGGACTCCATCCCCAAGTAGAGACGGTTTGAGAACCTCTCCTGCTGGAGTAACATCATCTGCATCTGTGAGGGAGAAGATTGGCGGGACTGCTTGGGAACTTCAGCAGGATAAAACTGAATGGAAAACTACTAGTTCAGAACCAAACTCATGGCAGGCTTTTCCGGAGGAACCGGAACCACAAAAGTCCCTTTCAGCAGACAGTACTTCCAAATCTGTCAGGACAAGAAATGGTCTGCAGAACAAGCACCCTTCTCAACTAGTTACTGATTTTGATACATGGGGTTTTGGGGCAGATAACAACAGTGCTGGACGTGCTAGCAGCCCACAGATGCCAAGACTTAATGAAGGGAGTAACTCTCAGGGTTTTGGTGAGGCAAATGCCTTTGAGAGCAAGTCAACTTCCCAACCTGCTGGATGGGCTGGTTTTTAA	2082	0.4347	MWRFKPFVHKEPTGLEGRSIDVGKLKINVHKAIAEGGFSCVYLARDVVHMSKQYALKHIICNDEESLGLVKNEISVMKLLVGHPNVVTLHAHTIFDMGRTKEAFLVMEFCEKSLVNVLESRGAGYFDEKQVLLIFRDVCSAVFAMHCQSPPIAHRDLKAENILLGSDGLWKLCDFGSTSTNHKRFEKPEEMGIEEDNIRKYTTPAYRAPEMWDLFLREVINEKVDIWALGCLLFRICYFKSAFDGESKLQVLNGNYRIPDLPKYTSSVTDLIRDMLQAKPDDRPDITQVWFRINEQLPINLQKSLPDRPPESPSSNNHEGASMSTNKSPPMPRRNPPPPPSSGEPKTTPQPSLASRGGESGGQLGAFWSTLHAKDSVVPEEKSKPIYDEEPSSLHMSLKHDRIRPDNDQLPKNFSANKVVNAQTRTVKSSVHGKLHKPDSVSSKDFEINFFQDKDHASGGRISSMENTTNFQDQAFNTFVAEFDTTKLNSGLGNKSEREEALEAEVEKLREQLKETNLEKAEITSKYEKLSAICRSQRQELQDLKQALAARTPSPSRDGLRTSPAGVTSSASVREKIGGTAWELQQDKTEWKTTSSEPNSWQAFPEEPEPQKSLSADSTSKSVRTRNGLQNKHPSQLVTDFDTWGFGADNNSAGRASSPQMPRLNEGSNSQGFGEANAFESKSTSQPAGWAGF	693

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gabi750g00001	693	MobiDBLite	consensus disorder prediction	548	693	-	-
	Gabi750g00001	693	PANTHER	SERINE/THREONINE PROTEIN KINASE	1	677	-	-
	Gabi750g00001	693	SUPERFAMILY	Protein kinase-like (PK-like)	29	343	IPR011009	-
	Gabi750g00001	693	MobiDBLite	consensus disorder prediction	556	575	-	-
	Gabi750g00001	693	MobiDBLite	consensus disorder prediction	650	693	-	-
	Gabi750g00001	693	Gene3D	Transferase(Phosphotransferase) domain 1	11	306	-	-
	Gabi750g00001	693	Pfam	Protein kinase domain	29	289	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Gabi750g00001	693	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	152	164	IPR008271	GO:0004672\|GO:0006468
	Gabi750g00001	693	MobiDBLite	consensus disorder prediction	301	329	-	-
	Gabi750g00001	693	MobiDBLite	consensus disorder prediction	612	638	-	-
	Gabi750g00001	693	ProSiteProfiles	Protein kinase domain profile.	27	297	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Gabi750g00001	693	Coils	Coil	492	547	-	-
	Gabi750g00001	693	CDD	STKc_GAK_like	26	298	-	-
	Gabi750g00001	693	MobiDBLite	consensus disorder prediction	301	365	-	-
	Gabi750g00001	693	SMART	serkin_6	27	291	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Gabi750g00001	693	MobiDBLite	consensus disorder prediction	586	602	-	-
	Gabi750g00001	693	MobiDBLite	consensus disorder prediction	330	346	-	-
	Gabi750g00001	693	FunFam	probable serine/threonine-protein kinase DDB_G0280111	10	305	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gabi750g00001	Gabi-Chr750	86650	91616	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gabi750g00001	26	292	Miscellaneous Gene Families	AT2G34180	29.181	2.85e-20	92.8

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	NAK	Gabi750g00001		Pkinase	9.2e-39	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gabi750g00001	K08853		-	gmx:100780879	1073.92