Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi745g00001 ATGGAGGACACCGCTGAGTCTCGCTTCTCTGAGTTCTGCGAGAGTGGGCTATCATTGGAAGAGAACAGCTGTAGACAAGCAATGAAGCTGTTTGGAGAAACCAAACATGTGTTACTGACAAATGTCTTATCAATTGGGAATGGAACGTCCGAGGAAGCAGAACGTTATTGGTTTTCCTTTATTTTATACTCTATCAAGAGATTGACTGTGAAAAATGCGGAGAGTGAGAAGGAGGAGACTGATAACAATGGGCTTACCTTGTGCCAGATATTGAGAGCGTTGAAGCTTAATATTGCAGATTTTTTTAGAGAACTTCCTCAGTTTGTTATTAAGGCTGGTCCAATTTTGAGTAATTTATATGGCACTGATTGGGAAAACAGGCTTGAGGCGAAGGAGGTGCATACTAGTGCTATTCACCTAAAGATTCTTAGCAAGTACTATAAACGTGTATTTGAAGAGTTCTTCTTGGAAAATGGTACAAACGTTGAAAACAACTCAGCTGGTAATGTTCATATATCTGAGTTCCATCGCTTTGGATGGCTACTTTTCTTGGCACTTCGTGCACATGCTTTCAGCTGTTTCAAAGACTTGGTGTCTTGTACCAGTGGTTTAGTTTCTGTCTTGGCCATCTTGATTATTCATGTTCCTGTTCGTTTTCGGAATTTCAAGGTGCATGATTCTTCACACTTTGTTAAGAAAAGCAGCAAAGGTGTGGACCTCCTTGCATCACTTTGCAACATTTATAACTCTTCAGAAGATGACTTGAGGAAAACGATGGAGAATGTTAATAATTTGATCGCCGATATATTGAAGAAAAAGCCCCTGCCAGCATCTGAATTTGAAACTGAAAACCTAGAGAATTTTGATAGAGATGGTTTGATCTATTTTGAAGATCTGATGGAGGAAGCATCTCTGCTATCCAATTTAAAAATCTTAGAAAAGGATTATGATTACACAATTCGTAACAAGGGCGAACTTGATGAGAGGTTGTTCATTAACGAGGACGATAGCTTGTTAGCTTCAGGAAGCTCGTCTGGAGGTTCTATGTCAGAATCTGGTGTCAAGAGGAAATTTGATTCGTTGGCATCACCTGCAAAGACAATTAAAAGTCCACTCTCTCCCCATCGTTCTCCTACATCCCATGCTAATGTCATTTCCAGTAGTACAAATTCAAAGATGGAAGCCACCCCTGTAAGCACAGCAATGGTTACTGCAAAGTGGCTTCGTACTGTCATTTCTCCACTTCCATCAAAGCCCTCACCAGAGCTGGAGAGATATCTGACATCATGTGATAGGGATGTTACAAGTGATGTGGTGCGAAGGGCGCAGATTATATTGCAGGCTATATTTCCTAGTAGTCCTCTCGGAGAACAATGTGCAACTGGAAGTGCTAACCTCATGGACAATGTCTGGGCGGGACAGAGAAGATTGGAAGCCCTTAAGTTATACTATAGGGTATTGGAAGCAATGTGCAGAGCAGAAGCCGAAACTCTGCGTACAACTAATTTAACATCGCTACTAACCAATGAGAGGTTCCATTGGTGTATGCTTGCATGTTCTGCAGAACTAGTCCTGGCTACGCACAAGACTGTAACAATGTTGTTCCCTGCAGTACTGGAGAAGACTGGAATTACAGCTTTTGATCTTTCCAAGGTCATAGAAAGTTTCATTAGACATGAGGAATCTCTCCCAAGAGAATTGAGGCGACATCTGAATTCATTGGAAGAACGACTTTTGGAAAGCATGGTTTGGGAAAAGGGTTCCTCCATGTATAATTCTTTGATAGTTGCTAGACCTGCCCTTTCTGCTGAAATAAATCGTCTTGGACTGTTAGCTGCACCATTGCCATCGTTGGATGAAATTGCAATGCGTATTAACTTCTCTTGTGGAGGGTTGCCTCCAGTGCCTTCCTTGCAGAAGCTTGAGACTTCACCAACTCAGAATGGGCATACCAGATCTCCAAAGCGACTGTGCACAGAATATCGAAGTTCGTCAGCTGAACGAAATTCATTTGCATCACCTGTGAAAGATCGGCTTCTGCCCTTCAGTGACCTTAAGTCAAAGCTTCCCCCTCCTCCTATGCAGGCTGCTTTTGCCAGTCCCACAAGACCAAACCCAGGAGGTGGAGGGGATACTTGTGCAGAAATTGCAATTAATATCGCTTTTGGCAAGATCATTAAGTTAGGAGCAGTCAGAATAAGTGGTATGGCTGAAAGGCTAAAATTATCACAGCAGATGAGGGAGAATGTATACTGTCTTTTCCAACAAATCCTAAATCGACGGACCTCTCTCTTCTTCAATCGCCATATTGACCAAATCATATTATGTTGCTTTTATGGAGTTTCTAAGATTTCTCAACTAAACCTAACTTTTAAAGAGATCTTATACAAATATAGAAAGCAACCGCAATCCAAACCAGAAGTTTTTCACAGTGTATTTGTTGATTGGTCATTGGCACGCCATAACAGGAGAACTGGTCAGGAGCATGTTGGCATCATTTCATTTTACAATGAAATATTCATTCCCTCTGTAAAACCACTTCTGATTGAACTAGGCCCTGGGGGTACAAAACACAGTACCGGGAAACCAGAAGTCAATAATAGTACTGACGGCCGTTTGACTCAATCTCCTGGATCTCCTAAATTATCCCCTTTTTCAAGCCTTCCTGATATGTCTCCAAAAAAAGTGTCTTCGTCACGTAATGTATATGTCTCTCCATTACGATCTTCTAAGATGGATGCTCTAATATCAAATAACTCAAAAAGCTATTATGCCTGTGTTGGGGAGAGCACTCATGCATATCAGAGCCCTTCTAAAGACCTGACAGCCATCAATAACCGTTTGAATGGCACCAGGAAGGTTAGAGGTGCCCTCAATTTTGATGACGATGATGTTGGCTTGGTTAGTGACTCTATGGTTGCAAATAGCCTCAATCTACAGAATGACAGTTGTGCATCCTCGTCTTGTCCACCAGTGAAGTCAGAGCAACCCAACTTTTAA 3000 0.418 MEDTAESRFSEFCESGLSLEENSCRQAMKLFGETKHVLLTNVLSIGNGTSEEAERYWFSFILYSIKRLTVKNAESEKEETDNNGLTLCQILRALKLNIADFFRELPQFVIKAGPILSNLYGTDWENRLEAKEVHTSAIHLKILSKYYKRVFEEFFLENGTNVENNSAGNVHISEFHRFGWLLFLALRAHAFSCFKDLVSCTSGLVSVLAILIIHVPVRFRNFKVHDSSHFVKKSSKGVDLLASLCNIYNSSEDDLRKTMENVNNLIADILKKKPLPASEFETENLENFDRDGLIYFEDLMEEASLLSNLKILEKDYDYTIRNKGELDERLFINEDDSLLASGSSSGGSMSESGVKRKFDSLASPAKTIKSPLSPHRSPTSHANVISSSTNSKMEATPVSTAMVTAKWLRTVISPLPSKPSPELERYLTSCDRDVTSDVVRRAQIILQAIFPSSPLGEQCATGSANLMDNVWAGQRRLEALKLYYRVLEAMCRAEAETLRTTNLTSLLTNERFHWCMLACSAELVLATHKTVTMLFPAVLEKTGITAFDLSKVIESFIRHEESLPRELRRHLNSLEERLLESMVWEKGSSMYNSLIVARPALSAEINRLGLLAAPLPSLDEIAMRINFSCGGLPPVPSLQKLETSPTQNGHTRSPKRLCTEYRSSSAERNSFASPVKDRLLPFSDLKSKLPPPPMQAAFASPTRPNPGGGGDTCAEIAINIAFGKIIKLGAVRISGMAERLKLSQQMRENVYCLFQQILNRRTSLFFNRHIDQIILCCFYGVSKISQLNLTFKEILYKYRKQPQSKPEVFHSVFVDWSLARHNRRTGQEHVGIISFYNEIFIPSVKPLLIELGPGGTKHSTGKPEVNNSTDGRLTQSPGSPKLSPFSSLPDMSPKKVSSSRNVYVSPLRSSKMDALISNNSKSYYACVGESTHAYQSPSKDLTAINNRLNGTRKVRGALNFDDDDVGLVSDSMVANSLNLQNDSCASSSCPPVKSEQPNF 999
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi745g00001 999 Gene3D - 175 333 - -
Gabi745g00001 999 MobiDBLite consensus disorder prediction 860 902 - -
Gabi745g00001 999 Gene3D - 399 584 - -
Gabi745g00001 999 MobiDBLite consensus disorder prediction 855 902 - -
Gabi745g00001 999 SUPERFAMILY Cyclin-like 717 859 IPR036915 -
Gabi745g00001 999 Gene3D - 657 870 - -
Gabi745g00001 999 Pfam Domain of unknown function (DUF3452) 79 214 IPR024599 -
Gabi745g00001 999 SMART DUF3452_2 68 214 IPR024599 -
Gabi745g00001 999 Pfam Retinoblastoma-associated protein B domain 718 845 IPR002719 GO:0005634|GO:0051726
Gabi745g00001 999 FunFam Retinoblastoma-related protein 1 399 584 - -
Gabi745g00001 999 MobiDBLite consensus disorder prediction 367 397 - -
Gabi745g00001 999 FunFam Retinoblastoma-related protein 1 175 333 - -
Gabi745g00001 999 PANTHER RETINOBLASTOMA-ASSOCIATED PROTEIN RB -RELATED 1 997 IPR028309 GO:0006357|GO:0051726
Gabi745g00001 999 FunFam Retinoblastoma-related protein 1 668 879 - -
Gabi745g00001 999 SUPERFAMILY Cyclin-like 404 596 IPR036915 -
Gabi745g00001 999 SMART RB_A_2 396 594 IPR002720 GO:0005634|GO:0051726
Gabi745g00001 999 Pfam Retinoblastoma-associated protein A domain 396 594 IPR002720 GO:0005634|GO:0051726
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi745g00001 Gabi-Chr745 7096 23415 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi745g00001 5 995 Core Cell Cycle Gene Families AT3G12280 66.401 0.0 1320
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR RB Gabi745g00001 RB_A 3.1e-64 CL0065
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi745g00001 K04681 - gmx:100779266 1583.16