Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi742g00016 ATGGCAGCTACAATGGATTTGTACAGCACACCACAACTTCAGTCAGATCCCTTCAGAGATGAGTTAATGGAAGTTCTAGAATCTTTTATGAAGAGTTCTTCCACAACTCCCTCTGCATCCTCATCCCCTTCTTCAAATTCATATCTACCTTCTACTTCTAATTCTTCTATTTCTTACTCTCCTTCTCCTCCTTCTCCTTCTCCTTCCCCTTCCCCTTCCTACTTCACTTCCTCCCCTTCACTCCCTCCTACACAGCCCAATTTCTACACAGATGGTTGCTCAACAACGATGACCCACCTATTTGCCTCTGGGTTATCCAACAGCCAAAACTTTATTGGCTTTGAGCAACCAAGCTCTCTCCTTGGGCTCAACAACCTTACCCCATCTCAGATTAACCAGATCCAAACCCAGATCCACCTCCAGAGCCAGCATCACAATAACAACAACAACCACCTCAGCTTCCTCAGTCCCAAACCTGTCCCCATGAAGCAAGTGGGTGGTGCACCTCCCAAACCCACTAAGCTCTACAGAGGGGTAAGGCAAAGGCATTGGGGGAAATGGGTCGCTGAGATCAGACTCCCAAAGAACCGTACAAGACTCTGGCTTGGTACCTTTGACACTGCTGAAGAAGCTGCTTTGGCTTATGACAAAGCTGCGTACAGGCTCAGAGGGGACTTTGCAAGGCTCAACTTTCCGAACCTAAGGCACCAAGGTTCATGTGTTGGTGGTGCGTTCGGTGAGTACAAGCCTCTTCAGTCCTCCGTTGATGCAAAGCTTGATGCTATCTGTGAGAGCTTGGCTGATATGCAGAAACAAGGGAAGCAAGAGAAGGCTGTGAGGTCATCTAAGAAGTCTAAACTGGCTTCAAAGGAGGCTCAGCCAAAGTTGGAGAACCCTTGCAAGGTGGAACCCTCTTTGTCTCCGGTTATGACCGAGAGTGATGGTTCTGCAGGTTCTTCTCCTTTGTCTGATCTTACATTTGGTGATGTCACTGAGCCACAATGGGAAGCTGCTTCAGAACATTTTAATCTGCAGAAGTTCCCTTCTTATGAGATTGATTGGGATTCTCTGTGA 1074 0.4758 MAATMDLYSTPQLQSDPFRDELMEVLESFMKSSSTTPSASSSPSSNSYLPSTSNSSISYSPSPPSPSPSPSPSYFTSSPSLPPTQPNFYTDGCSTTMTHLFASGLSNSQNFIGFEQPSSLLGLNNLTPSQINQIQTQIHLQSQHHNNNNNHLSFLSPKPVPMKQVGGAPPKPTKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAALAYDKAAYRLRGDFARLNFPNLRHQGSCVGGAFGEYKPLQSSVDAKLDAICESLADMQKQGKQEKAVRSSKKSKLASKEAQPKLENPCKVEPSLSPVMTESDGSAGSSPLSDLTFGDVTEPQWEAASEHFNLQKFPSYEIDWDSL 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi742g00016 357 CDD AP2 174 234 IPR001471 GO:0003700|GO:0006355
Gabi742g00016 357 MobiDBLite consensus disorder prediction 274 327 - -
Gabi742g00016 357 SMART rav1_2 175 238 IPR001471 GO:0003700|GO:0006355
Gabi742g00016 357 FunFam Ethylene-responsive transcription factor 2 174 233 - -
Gabi742g00016 357 MobiDBLite consensus disorder prediction 61 79 - -
Gabi742g00016 357 MobiDBLite consensus disorder prediction 28 60 - -
Gabi742g00016 357 SUPERFAMILY DNA-binding domain 175 233 IPR016177 GO:0003677
Gabi742g00016 357 MobiDBLite consensus disorder prediction 274 291 - -
Gabi742g00016 357 Pfam AP2 domain 176 224 IPR001471 GO:0003700|GO:0006355
Gabi742g00016 357 ProSiteProfiles AP2/ERF domain profile. 175 232 IPR001471 GO:0003700|GO:0006355
Gabi742g00016 357 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 3 357 - -
Gabi742g00016 357 MobiDBLite consensus disorder prediction 1 16 - -
Gabi742g00016 357 Gene3D AP2/ERF domain 175 233 IPR036955 GO:0003700|GO:0006355
Gabi742g00016 357 MobiDBLite consensus disorder prediction 1 89 - -
Gabi742g00016 357 MobiDBLite consensus disorder prediction 309 327 - -
Gabi742g00016 357 PRINTS Ethylene responsive element binding protein signature 176 187 IPR001471 GO:0003700|GO:0006355
Gabi742g00016 357 PRINTS Ethylene responsive element binding protein signature 198 214 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi742g00016 Gabi-Chr742 160190 162268 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi742g00016 1 357 AP2-EREBP Transcription Factor Family AT1G78080 54.354 1.57e-104 309
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gabi742g00016 AP2 1.4e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi742g00016 K09286 - qsa:O6P43_019667 416.772