Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi739g00024 ATGGCTGAGAGAAAGTTTAGGTTAGGTCGCCAAAAGATTCCAATGGAGAAAATATCAAAAAAGAGTAATCTAAAAGTTACATTCTCCAAGCGCCGTGGAGGACTTTTCAAAAAGGCTAGTGAGCTTTGCACACTTTGTGGAGTGGAAATTGCAATCATTGTTTTCTCTCCATCTGATAAGGCCTTCTCTTTTGGCCACCCAGAAGTTGAATCCTTAATTGATTCTTATCTAACTCGAAACACTCCATTAGACCCTAGTACTACTAGTAACCAACTTGTTAATGTTGGTCGTAATGCTAACGTTTTTAATCTGAACATGCAACTTACTCAGATTCTTAATCAGATGGAGATTGAGAAAAAGCTTGGAGAAGAGCTAGATCGAGCGCGGAAAGCTAGGCAAACACAATTCTGGTGGGAAACTCCCATTGATGAGCTTGGACAGCATGAGTTACAACATTTAATGTTTTCAATGGAGAAGCTAAAGAAGATTGTTACAACACATGCTAACAGAGTGTTCATGGAGCAGGCTAGTTTTCCTTTACCAATTACTGGGCCTGGCCCAAATGGATTTGGGCTTTATGCTGTCTCCGAGAACAACCCTGCTCGCATTAATGCTAATCCCTCTATTCTGAGTTTTCCATATTGA 645 0.4031 MAERKFRLGRQKIPMEKISKKSNLKVTFSKRRGGLFKKASELCTLCGVEIAIIVFSPSDKAFSFGHPEVESLIDSYLTRNTPLDPSTTSNQLVNVGRNANVFNLNMQLTQILNQMEIEKKLGEELDRARKARQTQFWWETPIDELGQHELQHLMFSMEKLKKIVTTHANRVFMEQASFPLPITGPGPNGFGLYAVSENNPARINANPSILSFPY 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi739g00024 214 SUPERFAMILY SRF-like 9 80 IPR036879 GO:0003677|GO:0046983
Gabi739g00024 214 PRINTS MADS domain signature 10 30 IPR002100 GO:0003677|GO:0046983
Gabi739g00024 214 PRINTS MADS domain signature 45 66 IPR002100 GO:0003677|GO:0046983
Gabi739g00024 214 PRINTS MADS domain signature 30 45 IPR002100 GO:0003677|GO:0046983
Gabi739g00024 214 Gene3D - 90 177 - -
Gabi739g00024 214 Gene3D - 20 89 IPR036879 GO:0003677|GO:0046983
Gabi739g00024 214 CDD MADS_MEF2_like 9 78 IPR033896 GO:0000977|GO:0045944
Gabi739g00024 214 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 17 64 IPR002100 GO:0003677|GO:0046983
Gabi739g00024 214 FunFam Agamous-like MADS-box protein AGL62 20 86 - -
Gabi739g00024 214 SMART madsneu2 8 67 IPR002100 GO:0003677|GO:0046983
Gabi739g00024 214 ProSiteProfiles MADS-box domain profile. 8 68 IPR002100 GO:0003677|GO:0046983
Gabi739g00024 214 PANTHER MADS BOX PROTEIN 10 166 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi739g00024 Gabi-Chr739 168903 169547 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi739g00024 9 200 Type I MADS-box Gene Family AT5G60440 51.020 1.07e-55 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Gabi739g00024 SRF-TF 4.1e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi739g00024 - - lja:Lj0g3v0067779.1 238.424