Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi728g00011 ATGTCGTTTAGGAGTATCATCCTGGATAGGAAGGGATTTGAGGTGAAGTTTGGGTATGGTATGAGATCCAGGTCACAGTCACACAGTGATGTTATTGCCCAGGATAGTTTGGTGGTGCTTGATGGCTTGAAGCAGAGTTGTTGGGCTAACATGCCCCCAGAGCTTTTGAGGGATGTTCTCATGAGGATAGAGGCCTCAGAAAACACCTGGCCTTCCCGGAAACATGTCGTCGCCTGCGCCGGTGTTTGCCGCAGTTGGAGAGACATTATGAAGGAAATTGTCAAATCTCCTCAAGTATCCAGCATGTTGACATTCCCAATCTCCTTGAAGCAGCCTGGTCCAAGGGACTCTCTTCTTCAGTGCTATATTAGACGAAATCGCGCCTCAACTGACGATGACAAGTTCCTGCTTGCTGCACGAAAGTTTCGACGGGCAACCCACACTGACTATATCATATCTCTAAACAATGGCGATGTATCAAGAGGGAGCAGCACCTATATTGGGAAGTTGAGATCAAACTTTCTGGGCACCAAATTCACCGTGTATGATGCACGCCCTCCAATTTGTGGAGCCAAAGTTACAAAGTCTCGTTCTACCAGGCTAGTTAGTCTCAAGCAAGTGTCTCCAAGAGTTCCTGCTGGCAACTATCCTATTGCGCATATCTCATATGATCTGAATGTTTTGGGCTCTAGGGGCCCTAGGATAATGCAATGTGTTATGGATGCTATCCCTGCCTCAGCTGTTGAACCTGGAGGTGTGGCCCCGACACAGACTCAATTTCTTCATAGCAGAATTGATACTTCTCCATCTATCCCTTTCTTTAGATCAAAATCAACCCGCATGGAGAATCTCCAATCTGTACCTTTGACTTGTCAAAATGAGGGGACACTGGTATTACGAAACAAGTCCCCTAGGTGGCATGAACAACTCCAATGCTGGTGTCTTAACTTCAATGGACGAGTAACAGTTGCTTCAGTAAAAAATTTCCAGCTGGTTGCTTCTCCTAAAAATGGAGTTTCTGAGCAGGCTCAGGAAAATGTCATTCTACAGTTTGGAAAAGTCGGAAAGGATGTATTCACCATGGATTACCAGTATCCAATCTCTGCCTTTGAAGCATTTGCAATATGCCTTAGCAGCTTTGACACCAAGATTGCTTGTGAATAA 1164 0.4553 MSFRSIILDRKGFEVKFGYGMRSRSQSHSDVIAQDSLVVLDGLKQSCWANMPPELLRDVLMRIEASENTWPSRKHVVACAGVCRSWRDIMKEIVKSPQVSSMLTFPISLKQPGPRDSLLQCYIRRNRASTDDDKFLLAARKFRRATHTDYIISLNNGDVSRGSSTYIGKLRSNFLGTKFTVYDARPPICGAKVTKSRSTRLVSLKQVSPRVPAGNYPIAHISYDLNVLGSRGPRIMQCVMDAIPASAVEPGGVAPTQTQFLHSRIDTSPSIPFFRSKSTRMENLQSVPLTCQNEGTLVLRNKSPRWHEQLQCWCLNFNGRVTVASVKNFQLVASPKNGVSEQAQENVILQFGKVGKDVFTMDYQYPISAFEAFAICLSSFDTKIACE 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi728g00011 387 CDD F-box_AtTLP-like 48 92 - -
Gabi728g00011 387 Gene3D Tubby Protein; Chain A 102 387 IPR025659 -
Gabi728g00011 387 Pfam F-box domain 48 94 IPR001810 GO:0005515
Gabi728g00011 387 SUPERFAMILY F-box domain 42 91 IPR036047 GO:0005515
Gabi728g00011 387 PRINTS Tubby superfamily signature 365 387 IPR000007 -
Gabi728g00011 387 PRINTS Tubby superfamily signature 150 166 IPR000007 -
Gabi728g00011 387 PRINTS Tubby superfamily signature 299 316 IPR000007 -
Gabi728g00011 387 PRINTS Tubby superfamily signature 344 363 IPR000007 -
Gabi728g00011 387 PRINTS Tubby superfamily signature 166 190 IPR000007 -
Gabi728g00011 387 PRINTS Tubby superfamily signature 215 242 IPR000007 -
Gabi728g00011 387 PRINTS Tubby superfamily signature 317 333 IPR000007 -
Gabi728g00011 387 SUPERFAMILY Tubby C-terminal domain-like 97 387 IPR025659 -
Gabi728g00011 387 ProSitePatterns Tub family signature 2. 372 387 IPR018066 -
Gabi728g00011 387 PANTHER TUBBY-RELATED 31 385 - -
Gabi728g00011 387 Pfam Tub family 109 382 IPR000007 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi728g00011 Gabi-Chr728 144484 150064 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi728g00011 1 387 TUB Transcription Factor Family AT2G47900 71.845 0.0 577
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Gabi728g00011 Tub 1.8e-99 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi728g00011 K19600 - gmx:100809257 723.391