Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi726g00005 ATGGGGAGGATCAAACCTCAAACTCTTATACAGCAAAGCAAAAGGAAGAAGGCGCCTTCCCGCATCAGTGCCACGTCTATTGTATTTTACTCATTAATTCTTTTCATATTTGCGTTTTTCCTGTTTGCTACATACAGGCATTGGTCCAACAGGACGAGATTTCAACCAGAGAACCACATATCAGTCTCAGAGGATGAAAATACTTTTGTGGAATCCAAGAAATCTGATTTACCTGGATACGCTGTTTTAAATACCTCTAAAGGTTCTATAATAATAGAACTTTACAAGGAAAGTGCCCCTGAAGTTGTTGATGAATTCATTGACTTATGTCAAAAAGGGCACTTCAAGGGGATGCTTTTTCACCAAGTAATTAAGCACTATGTGATTCAGGCAAGTCATAACCAAGGGCCAGGAGCTACTGAAGATTGGAACCTGAGAGGAAAGAAATATACAAGTATGAAACATGAAGCGTTCATGCTTGGAACTTCCAAGGGCAAATACTTTAACAAAGGATTTGATCTTTTCATCACAACTGCACCAATACCAGATCTAAATGAGAAGCTTATAGTGTTTGGGCGGGTCATTAAGGGAGAGGATGTTGTTCAGGAAATTGAAGAAGTGGATACAGATGAACATTACCAACCAAAAATTTCTATTGGGATACTTGATGTGGCTCTTAGGCAGATGATGTGA 693 0.3911 MGRIKPQTLIQQSKRKKAPSRISATSIVFYSLILFIFAFFLFATYRHWSNRTRFQPENHISVSEDENTFVESKKSDLPGYAVLNTSKGSIIIELYKESAPEVVDEFIDLCQKGHFKGMLFHQVIKHYVIQASHNQGPGATEDWNLRGKKYTSMKHEAFMLGTSKGKYFNKGFDLFITTAPIPDLNEKLIVFGRVIKGEDVVQEIEEVDTDEHYQPKISIGILDVALRQMM 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi726g00005 230 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE CYP21-4 1 229 - -
Gabi726g00005 230 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 82 224 IPR002130 GO:0000413|GO:0003755
Gabi726g00005 230 SUPERFAMILY Cyclophilin-like 77 225 IPR029000 -
Gabi726g00005 230 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 186 201 IPR002130 GO:0000413|GO:0003755
Gabi726g00005 230 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 94 109 IPR002130 GO:0000413|GO:0003755
Gabi726g00005 230 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 173 185 IPR002130 GO:0000413|GO:0003755
Gabi726g00005 230 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 120 132 IPR002130 GO:0000413|GO:0003755
Gabi726g00005 230 FunFam Peptidyl-prolyl cis-trans isomerase 67 230 - -
Gabi726g00005 230 Gene3D - 64 229 IPR029000 -
Gabi726g00005 230 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 77 226 IPR002130 GO:0000413|GO:0003755
Gabi726g00005 230 CDD cyclophilin 82 223 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi726g00005 Gabi-Chr726 144176 151801 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi726g00005 79 226 U-box Gene Family AT5G67530 27.742 3.32e-14 69.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi726g00005 - - gmx:100796043 405.986