Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi726g00004 ATGGCTGAAGAAACAGTTGTAACCTCTTCTCCTGCCCCATTAAACTGGTGGGATCTCCATGCAAGTTCTCTTTCTCCATGGACTAACACTAACAACGAATGGAACAACCAACCAAACCCTAATTCTTCTTGTTCTTGTGAGGAAGATATATCAAGCCTTACCATTGAGTCCTCTAGTAGACTCGTTGCGCGACCTGCACCTTCCTCCATTGAGTTGATGAGAGAACATGCTTCAGATAATCAACTTTGGAGTCATGTTCTATCAAGTGTTGCTTGTGACGAAGAGTTGAACAGAAGCAGCCAAGGAATTGGAGACAATTTTCTAGATGCACTATCATCTAAAAGCATGACAAGATCAATGTTTGAACCAGCCTTTGACTACTTGAAGAAACTTGATACCAATTGGGAATATAGTGGCTCAACATCATTCAATAGTTTTGAGAAACATTTAAATGGGTTTAGTGATGAAATTATTGAGAATAATGAAAGGCTGAACAAGTTATCTAATCTTGTAAGTACTTGGTCTGTTGCCCCTCCTGATCCAGAAGTTAATGGCCACTTTGATCCACAAACAAACAATTCATCTTTAAGTTCTTCAATGGATCATCACACACAATCCGACCCTTGTCATATCAAGCAACCTTTTGAAGATTCTACATCATGTTCTGTTGGAGAAACAAGTAGAAATTCTGAAGGGTTTCCTAATTGCTATGATGTGGACACGAAGGTCAAGCAAGAAAATTACTATGCAAGTGAAGTTCTTGGATCCGTATTTGGTAGGTCATTCAATATAGATGGATATCAAAATGGATTTAATAACCATTTTGTAGGAGACAAGGGGAATCTTTACAATGGAATGCCGAATTTTTCTTCATGCACAAGAAAATTTTCCGATGTTATATCATTTACTGGTCAGCTAGGAAGGCCAATTATTGAAATTCATGCACCAGTTACTAGCACGAAATGCTTAAATTTATCAGAGTCAAGGAAGCAATGTCTTCAAACATCATCACCGACAAAAACTAATAATGGAAGAGGACAAAGGAGGGCCAGTGAAGTAAAGAAGAAAAGATCTGAAGACTCTTCAGACGCAATCTTGAAGAAGCCGAAGCAAGATGTATCCACAGATTCTTCTACAAAGGTGCAGGGACCCAAAGTTAAGCTAGGTGACAGGATCACGGCCCTTCAACAAATTGTGTCTCCATTTGGAAAGACAGACACTGCATCCGTGCTGTTTGAAGCAATTGGATACATTAAGTTTCTCCAAGAACAAGTACAGCTACTGAGTAACCCTTACTTGAAGACTAACTCACACAAGGATACATGGGGAAGCTTTGATAGAAAAGACAAGGGAGACGCAAAGCTAGACCTTAGAAGCAGAGGTCTTTGTGTAGTTCCCATTTCATGTACTCCTCAAGTTTACAGAGAGAATAGTGGACCTGACTATTGGACACCAGCGTACAGAGGATGTTTATATAAGTGA 1482 0.3947 MAEETVVTSSPAPLNWWDLHASSLSPWTNTNNEWNNQPNPNSSCSCEEDISSLTIESSSRLVARPAPSSIELMREHASDNQLWSHVLSSVACDEELNRSSQGIGDNFLDALSSKSMTRSMFEPAFDYLKKLDTNWEYSGSTSFNSFEKHLNGFSDEIIENNERLNKLSNLVSTWSVAPPDPEVNGHFDPQTNNSSLSSSMDHHTQSDPCHIKQPFEDSTSCSVGETSRNSEGFPNCYDVDTKVKQENYYASEVLGSVFGRSFNIDGYQNGFNNHFVGDKGNLYNGMPNFSSCTRKFSDVISFTGQLGRPIIEIHAPVTSTKCLNLSESRKQCLQTSSPTKTNNGRGQRRASEVKKKRSEDSSDAILKKPKQDVSTDSSTKVQGPKVKLGDRITALQQIVSPFGKTDTASVLFEAIGYIKFLQEQVQLLSNPYLKTNSHKDTWGSFDRKDKGDAKLDLRSRGLCVVPISCTPQVYRENSGPDYWTPAYRGCLYK 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi726g00004 493 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 387 437 IPR036638 GO:0046983
Gabi726g00004 493 CDD bHLH_AtbHLH_like 387 429 IPR045239 -
Gabi726g00004 493 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 372 421 IPR011598 GO:0046983
Gabi726g00004 493 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 190 473 - -
Gabi726g00004 493 MobiDBLite consensus disorder prediction 347 374 - -
Gabi726g00004 493 Gene3D - 385 441 IPR036638 GO:0046983
Gabi726g00004 493 MobiDBLite consensus disorder prediction 333 383 - -
Gabi726g00004 493 MobiDBLite consensus disorder prediction 181 213 - -
Gabi726g00004 493 MobiDBLite consensus disorder prediction 186 204 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi726g00004 Gabi-Chr726 102865 106642 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi726g00004 16 493 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G31050 30.695 2.54e-42 154
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi726g00004 - - gmx:100527800 670.618