Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi726g00003 ATGAAGCCCGAGTTCTACGAAATCTCCGACGACGAATGGGAGAACCACTCCTTCAAACCCTCCCGAGTTCTCAAGAGACCGCGAGCTTCTTCTTCTTCTTCTCCTTCTCCTCCACCAATCGAGTCATTCGCTTACGCCTCCCGTAAGCCCGAGGTTTCCGACGACGACAGTGATTGCGTCGAAATCATGCCAAACTCGGCTGGAAATCTCGACGAGCTGGAAGATGCTGATGTGGACGACGGCGGTTGCGCTGTGGCGAGCCGCGGCCGGCGGTTTATAATTGACGATGACGAGGACGACGATGATGGTGGTGGCGATAGGGATAGGAATGTTGCGGAATTGTACGAGGAGATAGGGTCCACCGATGACGAAGAGATTGACGAAGGAAATGAGGGCGATGTGGTTGGTAGCGCTTTGCACAAGTGCGCGAGGATCTCTGCGGAGTTGAAAGGGGAACTGTTCGGTTCTTCGGGGACAGCTTGCGAGAGGTATTCGGAGGTGGAATCTTCTTCAGTGAAAATCGTAACTCAGGAGGACGTTGATGTTGCATGTGCGTCTGAGGATTCGGATTTTCAGCCTCTGCTCAAACCGTATCAGCTGGTTGGCGTCAATTTTTTGCTTCTGTTGTATCGGAAGGGTATTGGAGGAGCCATATTGGCAGATGAAATGGGCCTTGGCAAGACAGTTCAAGCCATCACATATTTAACTTTGTTGAAGCGTTTGCACAATGATTCTGGTCCACATCTTATAGTATGTCCTGCTTCTGTTTTGGAAAACTGGAAAAGGGAACTAAAAAGGTGGTGCCCATCCTTTTCTGTTCTTCAATATCATGGGGCTGGACGTGCAGCATACTGCAAGGAGTTGAGCTCCCTGTCCAAGGCGAGATTGCCTCCCCCATTTAACGTTCTTCTTGTGTGTTATTCACTTTTTGAACGGCACAGTGCACAGCAGAAAGATGATCGTAAAATCCTGAAGCGTTGGAGGTGGAGCTGTGTGCTGATGGACGAGGCACATGCTTTGAAGGACAAAAATAGCTTCAGGTGGAAAAATCTGATGTCTGTTGCACGAAATGCAAACCAACGCTTGATGCTGACAGGCACACCGCTTCAGAATGATCTGCATGAGTTATGGTCATTGTTGGAGTTTATGATGCCTGATATTTTTGCTACTGAAGATGTTGACTTAAAAAAGTTACTAAATGCTGAAGATAGAGATTTGATTGGTCGTATGAAGTCCATCTTGGGACCATTTATTTTGCGGCGTTTGAAAGCTGATGTGATGCAGCAGCTTGTTCCAAAAATACAGAAGGTTGAATATGTGGTAATGGAAAAGCAACAGGAAAATGCTTACAAGGAAGCCATTGAGGAGTATCGTGCTGTTTCACAAGCTCGGATAGCGAAATGCTCTGGCCTTAACTCAAATAATATTCTTGGAGTTATTCCTCGACGACAGATAAATAACTATTTTGTCCAGTTTCGCAAGATTGCAAACCATCCCTTGTTGATAAGGAGAATCTATAATGATGAGGATGTCATTCGCTTTGCTCGGAAGCTACACCCTGTAGGTGCTTTTGGCTTTGAATGTACTTTGGACAGAGTTACAGAGGAACTTAAAAGTTACAATGACTTCTCTATTCACCGGCTTTTACTTCATTATGGTGTCAATGATAGAAAGGGAATCCTTCCGGATAAGCATGTTATGCTTTCTGCAAAATGTCGGGCCTTATCAGAACTTCTTCCATCACTAAAGGAGGGTGGTCATCGTGTGTTGATCTTTAGTCAATGGACATCTATGCTTGACATATTGGAGTGGACTTTGGATGTCATTGGGTTGACCTACAAACGGCTTGATGGAAGGTAG 1860 0.4586 MKPEFYEISDDEWENHSFKPSRVLKRPRASSSSSPSPPPIESFAYASRKPEVSDDDSDCVEIMPNSAGNLDELEDADVDDGGCAVASRGRRFIIDDDEDDDDGGGDRDRNVAELYEEIGSTDDEEIDEGNEGDVVGSALHKCARISAELKGELFGSSGTACERYSEVESSSVKIVTQEDVDVACASEDSDFQPLLKPYQLVGVNFLLLLYRKGIGGAILADEMGLGKTVQAITYLTLLKRLHNDSGPHLIVCPASVLENWKRELKRWCPSFSVLQYHGAGRAAYCKELSSLSKARLPPPFNVLLVCYSLFERHSAQQKDDRKILKRWRWSCVLMDEAHALKDKNSFRWKNLMSVARNANQRLMLTGTPLQNDLHELWSLLEFMMPDIFATEDVDLKKLLNAEDRDLIGRMKSILGPFILRRLKADVMQQLVPKIQKVEYVVMEKQQENAYKEAIEEYRAVSQARIAKCSGLNSNNILGVIPRRQINNYFVQFRKIANHPLLIRRIYNDEDVIRFARKLHPVGAFGFECTLDRVTEELKSYNDFSIHRLLLHYGVNDRKGILPDKHVMLSAKCRALSELLPSLKEGGHRVLIFSQWTSMLDILEWTLDVIGLTYKRLDGR 619
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi726g00003 619 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 208 386 IPR014001 -
Gabi726g00003 619 Gene3D - 168 446 IPR038718 -
Gabi726g00003 619 Gene3D - 556 619 IPR027417 -
Gabi726g00003 619 CDD SF2_C_SNF 561 619 - -
Gabi726g00003 619 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 423 619 IPR027417 -
Gabi726g00003 619 MobiDBLite consensus disorder prediction 26 40 - -
Gabi726g00003 619 CDD DEXHc_Snf 195 388 - -
Gabi726g00003 619 MobiDBLite consensus disorder prediction 1 56 - -
Gabi726g00003 619 MobiDBLite consensus disorder prediction 1 21 - -
Gabi726g00003 619 SMART ultradead3 191 396 IPR014001 -
Gabi726g00003 619 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 184 421 IPR027417 -
Gabi726g00003 619 Pfam SNF2-related domain 215 501 IPR000330 GO:0005524|GO:0140658
Gabi726g00003 619 PANTHER SNF2/RAD54 HELICASE FAMILY 130 618 - -
Gabi726g00003 619 FunFam Protein CHROMATIN REMODELING 19 isoform A 166 444 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi726g00003 Gabi-Chr726 30267 52556 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi726g00003 216 618 RAD5 or RAD16-like Gene Family AT5G22750 24.713 6.06e-24 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Gabi726g00003 SNF2_N 6.6e-55 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi726g00003 K14439 - gmx:100806323 1054.28