Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi726g00002 ATGAAGCCCGAGTTCTACGAAATCTCCGACGACGAATGGGAGAACCACTCCTTCAAACCCTCCCGAGTTCTCAAGAGACCGCGAGCTTCTTCTTCTTCTTCTCCTTCTCCTCCACCAATCGAGTCATTCGCTTACGCCTCCCGTAAGCCCGAGGTTTCCGACGACGACAGTGATTGCGTCGAAATCATGCCAAACTCGGCTGGAAATCTCGACGAGCTGGAAGATGCTGATGTGGACGACGGCGGTTGCGCTGTGGCGAGCCGCGGCCGGCGGTTTATAATTGACGATGACGAGGACGACGATGATGGTGGTGGCGATAGGGATAGGAATGTTGCGGAATTGTACGAGGAGATAGGGTCCACCGATGACGAAGAGATTGACGAAGGAAATGAGGGCGATGTGGTTGGTAGCGCTTTGCACAAGTGCGCGAGGATCTCTGCGGAGTTGAAAGGGGAACTGTTCGGTTCTTCGGGGACAGCTTGCGAGAGGTATTCGGAGGTGGAATCTTCTTCAGTGAAAATCGTAACTCAGGAGGACGTTGATGTTGCATGTGCGTCTGAGGATTCGGATTTTCAGCCTCTGCTCAAACCGTATCAGCTGGTTGGCGTCAATTTTTTGCTTCTGTTGTATCGGAAGGGTATTGGAGGAGCCATATTGGCAGATGAAATGGGCCTTGGCAAGACAGTTCAAGCCATCACATATTTAACTTTGTTGAAGCGTTTGCACAATGATTCTGGTCCACATCTTATAGTATGTCCTGCTTCTGTTTTGGAAAACTGGAAAAGGGAACTAAAAAGGTGGTGCCCATCCTTTTCTGTTCTTCAATATCATGGGGCTGGACGTGCAGCATACTGCAAGGAGTTGAGCTCCCTGTCCAAGGCGAGATTGCCTCCCCCATTTAACGTTCTTCTTGTGTGTTATTCACTTTTTGAACGGCACAGTGCACAGCAGAAAGATGATCGTAAAATCCTGAAGCGTTGGAGGTGGAGCTGTGTGCTGATGGACGAGGCACATGCTTTGAAGGACAAAAATAGCTTCAGGTGGAAAAATCTGATGTCTGTTGCACGAAATGCAAACCAACGCTTGATGCTGACAGGCACACCGCTTCAGAATGATCTGCATGAGTTATGGTCATTGTTGGAGTTTATGATGCCTGATATTTTTGCTACTGAAGATGTTGACTTAAAAAAGTTACTAAATGCTGAAGATAGAGATTTGATTGGTCGTATGAAGTCCATCTTGGGACCATTTATTTTGCGGCGTTTGAAAGCTGATGTGATGCAGCAGCTTGTTCCAAAAATACAGAAGGTTGAATATGTGGTAATGGAAAAGCAACAGGAAAATGCTTACAAGGAAGCCATTGAGGAGTATCGTGCTGTTTCACAAGCTCGGATAGCGAAATGCTCTGGCCTTAACTCAAATAATATTCTTGGAGTTATTCCTCGACGACAGATAAATAACTATTTTGTCCAGTTTCGCAAGATTGCAAACCATCCCTTGTTGATAAGGAGAATCTATAATGATGAGGATGTCATTCGCTTTGCTCGGAAGCTACACCCTGTAGGTGCTTTTGGCTTTGAATGTACTTTGGACAGAGTTACAGAGGAACTTAAAAGTTACAATGACTTCTCTATTCACCGGCTTTTACTTCATTATGGTGTCAATGATAGAAAGGGAATCCTTCCGGATAAGCATGTTATGCTTTCTGCAAAATGTCGGGCCTTATCAGAACTTCTTCCATCACTAAAGGAGGGTGGTCATCGTGTGTTGATCTTTAGTCAATGGACATCTATGCTTGACATATTGGAGTGGACTTTGGATGTCATTGGGTTGACCTACAAACGGCTTGATGGAAGTACACAGGTAGCAGAGCGGCAAACAATAGTTGATACATTCAATAATGATACTTCAATATTTGCATGCTTGCTTTCCACAAGAGCTGGCGGACAAGGCTTGAACTTAACAGGAGCTGATACCGTTGTAATTCATGACATGGATTTTAATCCACAGATTGATAGACAAGCTGAAGATCGATGTCACCGAATTGGTCAAACGAAGCCTGTAACCATATACAGGCTGGTGACTAGGGGAACAGTTGATGAAAATGTTTATGAGATTGCAAAGAGAAAGCTAGTATTGGATGCTGCTGTCCTCGAGTCCATGGAGGTGATTAATGAAGGTGACATGCCTGAGAAGACCATGGGAGAGATATTGTCAGCAATTTTGTTGAGTTAA 2235 0.451 MKPEFYEISDDEWENHSFKPSRVLKRPRASSSSSPSPPPIESFAYASRKPEVSDDDSDCVEIMPNSAGNLDELEDADVDDGGCAVASRGRRFIIDDDEDDDDGGGDRDRNVAELYEEIGSTDDEEIDEGNEGDVVGSALHKCARISAELKGELFGSSGTACERYSEVESSSVKIVTQEDVDVACASEDSDFQPLLKPYQLVGVNFLLLLYRKGIGGAILADEMGLGKTVQAITYLTLLKRLHNDSGPHLIVCPASVLENWKRELKRWCPSFSVLQYHGAGRAAYCKELSSLSKARLPPPFNVLLVCYSLFERHSAQQKDDRKILKRWRWSCVLMDEAHALKDKNSFRWKNLMSVARNANQRLMLTGTPLQNDLHELWSLLEFMMPDIFATEDVDLKKLLNAEDRDLIGRMKSILGPFILRRLKADVMQQLVPKIQKVEYVVMEKQQENAYKEAIEEYRAVSQARIAKCSGLNSNNILGVIPRRQINNYFVQFRKIANHPLLIRRIYNDEDVIRFARKLHPVGAFGFECTLDRVTEELKSYNDFSIHRLLLHYGVNDRKGILPDKHVMLSAKCRALSELLPSLKEGGHRVLIFSQWTSMLDILEWTLDVIGLTYKRLDGSTQVAERQTIVDTFNNDTSIFACLLSTRAGGQGLNLTGADTVVIHDMDFNPQIDRQAEDRCHRIGQTKPVTIYRLVTRGTVDENVYEIAKRKLVLDAAVLESMEVINEGDMPEKTMGEILSAILLS 744
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi726g00002 744 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 208 386 IPR014001 -
Gabi726g00002 744 Pfam SNF2-related domain 215 501 IPR000330 GO:0005524|GO:0140658
Gabi726g00002 744 Gene3D - 557 738 IPR027417 -
Gabi726g00002 744 Gene3D - 195 430 IPR038718 -
Gabi726g00002 744 SMART helicmild6 600 683 IPR001650 -
Gabi726g00002 744 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 327 725 IPR027417 -
Gabi726g00002 744 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 574 724 IPR001650 -
Gabi726g00002 744 PANTHER SNF2/RAD54 HELICASE FAMILY 130 720 - -
Gabi726g00002 744 MobiDBLite consensus disorder prediction 26 40 - -
Gabi726g00002 744 CDD DEXHc_Snf 195 388 - -
Gabi726g00002 744 MobiDBLite consensus disorder prediction 1 56 - -
Gabi726g00002 744 MobiDBLite consensus disorder prediction 1 21 - -
Gabi726g00002 744 Gene3D - 431 506 IPR027417 -
Gabi726g00002 744 FunFam Protein CHROMATIN REMODELING 19 isoform A 166 444 - -
Gabi726g00002 744 SMART ultradead3 191 396 IPR014001 -
Gabi726g00002 744 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 184 421 IPR027417 -
Gabi726g00002 744 Pfam Helicase conserved C-terminal domain 571 683 IPR001650 -
Gabi726g00002 744 CDD SF2_C_SNF 561 694 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi726g00002 Gabi-Chr726 29449 52556 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi726g00002 216 723 RAD5 or RAD16-like Gene Family AT5G22750 26.954 4.45e-48 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Gabi726g00002 SNF2_N 1e-54 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi726g00002 K14439 - gmx:100806323 1290.4