Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi726g00001 ATGGCTGCTGCTTCCTCATCCACACAGTTCTTGGGAATCAGACAAGAAAATCAAAGTCAGATTACACAACACCAATCCTCCACAGCTGCTTCCTCAACTGCTGCTCCAACCACAGTTACTCAAAAGAAAAGAAGGAATCAGCCTGGAACACCATATCCAGATGCGGAGGTGATAGCACTATCACCGAAGACACTAATGGCAACAAACAGGTTTATATGTGAAGTGTGCAACAAAGGGTTCCAAAGGGAGCAAAACCTACAGCTTCACAGAAGAGGACACAACTTGCCTTGGAAGTTAAAGCAGAAGACTACAAAAGAGCCAAAGAGAAAGGTTTATCTGTGTCCCGAACCCACATGCGTCCACCATGACCCTTCAAGGGCTCTTGGTGACCTCACTGGTATTAAGAAACACTACTCTCGCAAACATGGTGAGAAAAAATGGAAGTGTGACAAATGCTCCAAAAAATATGCTGTTCAATCTGATTGGAAAGCACATTCTAAAACTTGTGGCACCAGAGAATATAGATGTGACTGTGGCACTCTCTTCTCAAGGCGTGACAGTTTTATCACTCATAGAGCCTTTTGTGATGCACTAGCTCATGAGAGTGCAAGACACCCTTCCAACTTAAGCACTTTGGGGACTCATCTGTATGGCACAAACCACATGACCTTAGGCCTACCCCAAATGCAGAACCAGAACCAGAACCAGAACCAAGCAACCACTAACAACATGTTGAGCCTTGGAAATGCTTGTGTTGCACCAAAGTTTGAGCACTTAATCTCTCCTTTGCAGCATCACTCATCATTTGGACACTCACCCCAGTCAATGTCATCCTCATCAGCTTTCTTCATGACTGACCCAAATCAAGGTTTTCAAGACCTCCAATCTCCACAAGGACCATTCTCAAGCAAGCAAATGCATGGTCTTATGCAACTTCCTGATCTTCAAGGGAACACCAATAACTCCAATTCTGCTTCACCAACCAATCTTTTTAACCTCAGCTTCTTTCCAAATAGCAATAGCAGTGGCAGCATAATTTCTGACCAATTCAACATCATATCTAATAGCCCTGTAAATAATCAAGTTGGGTTAGGTTTGTCTTCACTCTTTGGCAATTCACAAGTGCAACAAGAGAACATGTGCTCACACATGTCTGCCACTGCATTGCTTCAGAAAGCTGCTCAAATGGGTTCAACAACAACAACCAAATGTTCCTCTTTACTAAGAGGAATGGGTAGCTCCTCAACCAATGGTGCAGAATCTGATCATAGTCAACTTGTGTCTGATAATCTTGCCACATTTGGAAGTGATCAAGGTATGAGATTAAGCATGGAAAACGAGCACCATAATCTACGTGGATTGATGAACTCTCTTGCCAATGGAAACACTTCCATATTTGGAAATGTTAAAGGGAACGAAAACAACCTAATTGGTCAGTTTCACAACATAGATGATCAAGAGGAGCCTAAAAAAATGTCCCAAAATCTTGGTGTGTGCTTTGGAGGATCTGATAAGTTAACGTTAGACTTTCTTGGTGTTGGAGGAATGGTGAGAAACATGAGTGGTGGGTTTTCACAAAGAGACCAACAACAACAACAACAACAACACTCCATGGGTGGTACTATGAGCTCGTTGGATCCTAAACTTGAACCAGCACATGCAAACCAACCTTTTGGAAGCTCAACACTGCATTAA 1695 0.4277 MAAASSSTQFLGIRQENQSQITQHQSSTAASSTAAPTTVTQKKRRNQPGTPYPDAEVIALSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEPKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCDKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAHESARHPSNLSTLGTHLYGTNHMTLGLPQMQNQNQNQNQATTNNMLSLGNACVAPKFEHLISPLQHHSSFGHSPQSMSSSSAFFMTDPNQGFQDLQSPQGPFSSKQMHGLMQLPDLQGNTNNSNSASPTNLFNLSFFPNSNSSGSIISDQFNIISNSPVNNQVGLGLSSLFGNSQVQQENMCSHMSATALLQKAAQMGSTTTTKCSSLLRGMGSSSTNGAESDHSQLVSDNLATFGSDQGMRLSMENEHHNLRGLMNSLANGNTSIFGNVKGNENNLIGQFHNIDDQEEPKKMSQNLGVCFGGSDKLTLDFLGVGGMVRNMSGGFSQRDQQQQQQQHSMGGTMSSLDPKLEPAHANQPFGSSTLH 564
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi726g00001 564 SMART c2h2final6 112 142 IPR013087 -
Gabi726g00001 564 SMART c2h2final6 71 93 IPR013087 -
Gabi726g00001 564 SMART c2h2final6 147 167 IPR013087 -
Gabi726g00001 564 MobiDBLite consensus disorder prediction 1 47 - -
Gabi726g00001 564 MobiDBLite consensus disorder prediction 522 542 - -
Gabi726g00001 564 ProSitePatterns Zinc finger C2H2 type domain signature. 73 93 IPR013087 -
Gabi726g00001 564 Gene3D Classic Zinc Finger 125 204 - -
Gabi726g00001 564 FunFam protein indeterminate-domain 12-like 50 118 - -
Gabi726g00001 564 SUPERFAMILY beta-beta-alpha zinc fingers 70 167 IPR036236 -
Gabi726g00001 564 MobiDBLite consensus disorder prediction 521 564 - -
Gabi726g00001 564 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 22 534 IPR031140 -
Gabi726g00001 564 Pfam Zinc-finger double-stranded RNA-binding 71 93 IPR022755 -
Gabi726g00001 564 MobiDBLite consensus disorder prediction 1 55 - -
Gabi726g00001 564 Gene3D Classic Zinc Finger 54 119 - -
Gabi726g00001 564 ProSiteProfiles Zinc finger C2H2 type domain profile. 71 93 IPR013087 -
Gabi726g00001 564 FunFam protein indeterminate-domain 5, chloroplastic-like 125 204 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi726g00001 Gabi-Chr726 14897 19355 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi726g00001 10 522 IDZ Gene Family AT2G02070 45.085 1.04e-129 390
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gabi726g00001 zf-C2H2_jaz 3.4e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi726g00001 K25870 - gmx:100806198 690.263