Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi722g00001 ATGCAGCATAGACAGATAGTGAATCTGATGGAATGGCAGAAACAGGTTCAGAATGAGAATGTTGATGCCAACAATGGGAAGGTTATAATGACTGACGAGCAGTTGGAAACTCTAAGTAAACAAATTGCCAACAATGGGAAGATTATTATGACTAATGAGCAGTTGGAAACTCTGAGGAAACAAATCGCAGCTTATGCCAACATTTCAGAGCAACTACTTCAGAAGCACAAAACACTCTCAGTTCAGTGCAATCTTTCAGGTGGAATAGTGGGAGATATATGCAGTGACCCATTAACCCACAAGAGGTGGACTCCGACACTCAAGCAGCTTCAGATTCTTGGGCGAATATTTGAGGAGGGGAAGGGGAAGGGAATTACAAACAAGGAAAAAATCATGGAGATAACTGCTGAACTGAGCCAGCATGGCCAAATATCTGAAAGAAATGTTTATAATTGGTTTCAGAACAAGCGAGCTCGACTGAAAAGAAAACAGCATAATGTGACAGAGGGTAGCACTGAATCAGAAATAGAGAAGGAGGAATATCAGTCCCAACCTAATGTAACTACAGAACTGAGCCAGCATGGCCAAACATCTGAAAGAAATGTTTATAATTGCTTTCAGAACAAGCGAGCTCGACTAAAAGAAAACAGCATAATTTGA 660 0.4076 MQHRQIVNLMEWQKQVQNENVDANNGKVIMTDEQLETLSKQIANNGKIIMTNEQLETLRKQIAAYANISEQLLQKHKTLSVQCNLSGGIVGDICSDPLTHKRWTPTLKQLQILGRIFEEGKGKGITNKEKIMEITAELSQHGQISERNVYNWFQNKRARLKRKQHNVTEGSTESEIEKEEYQSQPNVTTELSQHGQTSERNVYNCFQNKRARLKENSII 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi722g00001 219 PANTHER WUSCHEL-RELATED HOMEOBOX 13 187 214 IPR044559 GO:0003700
Gabi722g00001 219 SMART HOX_1 98 167 IPR001356 GO:0003677
Gabi722g00001 219 SUPERFAMILY Homeodomain-like 99 165 IPR009057 -
Gabi722g00001 219 MobiDBLite consensus disorder prediction 164 196 - -
Gabi722g00001 219 MobiDBLite consensus disorder prediction 164 180 - -
Gabi722g00001 219 Pfam Homeodomain 101 162 IPR001356 GO:0003677
Gabi722g00001 219 Coils Coil 55 75 - -
Gabi722g00001 219 ProSiteProfiles 'Homeobox' domain profile. 96 163 IPR001356 GO:0003677
Gabi722g00001 219 CDD homeodomain 101 164 IPR001356 GO:0003677
Gabi722g00001 219 MobiDBLite consensus disorder prediction 181 196 - -
Gabi722g00001 219 Gene3D - 102 169 - -
Gabi722g00001 219 Gene3D - 173 218 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi722g00001 Gabi-Chr722 2998 4347 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi722g00001 9 165 Wox Gene Family AT4G35550 50.000 2.72e-45 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Gabi722g00001 Homeodomain 1.8e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi722g00001 - - qsa:O6P43_024959 165.236