Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi718g00001 ATGGCTTCCATGAAAGACTTCAAAGCAAGTGAACTCTTTCAAGCTCAAGCTCACTTGTACAAACACATGTTTAACATCATTAGTCCCATGTGTATCAAGTGGGCCGTTAACCTTGGCATACCTGATATCATTCACAATCATGGTCAACCCATTACTCTTCACGACCTTGTTTCATCTCTTCATGTTCCTCATTCTAAAGCTACTTGTGTCCAACGTCTCATGCGTTTATTGTCACACAATGACTTCTTTGCAATCATCAAAACCGATGACACCAAAGAAGCGTATGCTCTTACTCCTTCATCACAACTCCTTGTCAAAGGCACTGACTATTGTTTGTCTTCAATGGTTCATTTGATAAACCACCCAACTATCGTTGATTTATTCCATCAGTTGGGTAAATGGACTTCTGGTGAGGACCCCACAATCTTTGAGACCGCATCAGGTCCTGGAGCCTTTTGGGATTTTATTCATCAAAATACCACGGATATGGAGAACTTCAATGAGGCCATGGAGAGTGATTCTCGTATGGTAAGGTTGGCTTTGAATGATTGCGAATCAGTTTTTGAGGGCTTGGATTCTCTAGTTGATGTTGGTGGTGGAACTGGAAACACAGCTAAGATTATTTGTAAGGCATTTCCTAATTTAAAATGCACGGTGATGGATCTTCCACAAGTTGTAGCAGACTTATCTGGAAATAATAATTTGAGTTATGTTGGTGGGAACATGTTTGAATCTATCCCTCATGCTGATGCAGTCTTACTCAAGTGGGTTTTACATGACTGGAATGATGATGATTGCATAATGATACTTAGAAATTGTAAAGAAGCTATTTCAGGCAAAGGAGGAAAAGTGATAATCATAGATACTGTGATAAATGAAAAACAAGATGAGCATGAAATGACAGAAGTAAAGGTACTCTTTGACATTGCAATGATGACTTTGCATAATGGAAAAGAGAGAGATGAAAACGATTGGAAGCAAATCTTTGTCAAAGCAGGCTTCGGACATTACAAGATATTCCCTATGTTTGGTTTTAGGTCTCTTGTTGAACTTTATCCCTAA 1062 0.3889 MASMKDFKASELFQAQAHLYKHMFNIISPMCIKWAVNLGIPDIIHNHGQPITLHDLVSSLHVPHSKATCVQRLMRLLSHNDFFAIIKTDDTKEAYALTPSSQLLVKGTDYCLSSMVHLINHPTIVDLFHQLGKWTSGEDPTIFETASGPGAFWDFIHQNTTDMENFNEAMESDSRMVRLALNDCESVFEGLDSLVDVGGGTGNTAKIICKAFPNLKCTVMDLPQVVADLSGNNNLSYVGGNMFESIPHADAVLLKWVLHDWNDDDCIMILRNCKEAISGKGGKVIIIDTVINEKQDEHEMTEVKVLFDIAMMTLHNGKERDENDWKQIFVKAGFGHYKIFPMFGFRSLVELYP 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi718g00001 353 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 20 353 IPR016461 GO:0008168
Gabi718g00001 353 PIRSF O-mtase 1 353 IPR016461 GO:0008168
Gabi718g00001 353 Pfam O-methyltransferase domain 128 334 IPR001077 GO:0008171
Gabi718g00001 353 SUPERFAMILY "Winged helix" DNA-binding domain 10 108 IPR036390 -
Gabi718g00001 353 Gene3D - 1 104 IPR036388 -
Gabi718g00001 353 Gene3D Vaccinia Virus protein VP39 105 353 IPR029063 -
Gabi718g00001 353 PANTHER O-METHYLTRANSFERASE 11 338 IPR016461 GO:0008168
Gabi718g00001 353 Pfam Dimerisation domain 30 78 IPR012967 GO:0046983
Gabi718g00001 353 FunFam Coniferyl alcohol 9-O-methyltransferase 2 104 - -
Gabi718g00001 353 FunFam O-methyltransferase ZRP4 106 353 - -
Gabi718g00001 353 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 112 351 IPR029063 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi718g00001 Gabi-Chr718 11518 12739 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi718g00001 27 351 Monolignol Biosynthesis Gene Families AT5G54160 31.642 4.89e-45 156
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi718g00001 K22588 - gmx:100818947 434.106