Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi714g00005 ATGTCCTCCTCCTCCTCCTCCAACCGCCTAACCACCGAGCAAGAACTCTCCGTCATAGTCGCCACCCTAACCAACGTCGTCGCCGGCTCCACCGATTTTATCCGCTTGCCGCAAACAACATCCGAGCCCGCCGTCGGAAGCAGCCTAGTCACCACCGTGAACGTGGAAACTTGCCGCGAATGCAAAATCGCGGGGTGTTTGGGGTGCAATTTCTTCCCCGAAGAGAAGAAGAAGCAGAAGAGGGCAAAGAAGAAGTACAGAGGCGTGAGGCAGAGGCCGTGGGGGAAATGGGCCTCGGAGATCCGTGACCCGAGGCGTGCGGCTCGGGTCTGGCTCGGGACCTTCAACACGGCTGAGGAAGCCGCCATGGCTTACGACAAAGCCGCCATCGAGTTCCGCGGGCCCCGAGCCAAGCTCAATTTTCCGTTGGTCGATGAGTCGCTGAGTTTGCCGCAACCGCAGCCAGAGACGGTTGCGACTGCAGAGCCGACGACACAAGATGTTAATTTGAATAATCAGGGAATTGAAATGGACACAATGGGATTTGGGAACAAGGAAAACGAATTCTGGGATAGGATTTCCGATGCTGATTTTCAACAATTCATGATGACGATGGATTTTGCTCCCGAACCACTCTTTGTTCCTAAGTTCTCTTAA 657 0.5464 MSSSSSSNRLTTEQELSVIVATLTNVVAGSTDFIRLPQTTSEPAVGSSLVTTVNVETCRECKIAGCLGCNFFPEEKKKQKRAKKKYRGVRQRPWGKWASEIRDPRRAARVWLGTFNTAEEAAMAYDKAAIEFRGPRAKLNFPLVDESLSLPQPQPETVATAEPTTQDVNLNNQGIEMDTMGFGNKENEFWDRISDADFQQFMMTMDFAPEPLFVPKFS 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi714g00005 218 Gene3D AP2/ERF domain 84 144 IPR036955 GO:0003700|GO:0006355
Gabi714g00005 218 PANTHER DNA-BINDING DOMAIN 57 156 IPR044808 GO:0003700|GO:0009873
Gabi714g00005 218 PRINTS Ethylene responsive element binding protein signature 86 97 IPR001471 GO:0003700|GO:0006355
Gabi714g00005 218 PRINTS Ethylene responsive element binding protein signature 108 124 IPR001471 GO:0003700|GO:0006355
Gabi714g00005 218 Pfam AP2 domain 85 134 IPR001471 GO:0003700|GO:0006355
Gabi714g00005 218 CDD AP2 86 142 IPR001471 GO:0003700|GO:0006355
Gabi714g00005 218 SUPERFAMILY DNA-binding domain 85 143 IPR016177 GO:0003677
Gabi714g00005 218 SMART rav1_2 85 148 IPR001471 GO:0003700|GO:0006355
Gabi714g00005 218 FunFam Ethylene-responsive transcription factor 2 84 143 - -
Gabi714g00005 218 ProSiteProfiles AP2/ERF domain profile. 85 142 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi714g00005 Gabi-Chr714 44937 45593 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi714g00005 9 153 AP2-EREBP Transcription Factor Family AT4G34410 46.961 1.37e-39 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Gabi714g00005 AP2 3.5e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi714g00005 - - gsj:114420690 272.322