Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi70g00012 ATGTCTTCTTCATCCTCCAAGATTCCTCAATGGGTCTACGACGTGTTCCTTAGCTTCAGAGGGGAAGACACTCGTACCACCTTCGTATCTTATCTGTATAATACCCTCTCAAGATCTGGAATCAACACTTACATCGATGAGAGGCTTCAGAGGGGAACGGAGGTGGGACCAGAACTATTGCGAGCAATAGAAGGGTCTCAAATATCTTTGGTTGTTTTCTCCGAAAACTATGCAGGATCTTTTTGGTGCCTTGATGAGCTGACAAAAATAATGGAATGCCGCAGAACTTACGGCCATGTCATGCTGCCCATATTTTACAATGTTGACCCATCTCATGTACGCGAACAGACGGGTGCTTTCGGAAAAGCCTTTGAAAAAATTTCAGACAATGTTCCCTCACAGGATGTGTTGTCCAGTTGGAGGAGGGCACTCACCGAAGCTGGAAATGTGTCTGGTTGGGATAATATGAATTACTGGGGTGCTGCTTATCTAGTGGAGAAAATTGTTCCTGAAGTTTTAGGTAAGCTAAACAACACAGTTTTGTCTATTACCGATTTTCCAGTTGGATTAGAATCCCGTGTGCAAGAAGTGATTGGGTTTATCGAAAATCAATCGAGCAAAGTTTGTATGGTAGGGATATGGGGTATGGGTGGATCGGGTAAAACAACCACAGCCAAAGCCATTTTCAATCAAATTCATCGCAAATTTGTGGATAGAAGTTTCATTGAAAATATTAGAGAAGTTTGTGAACAAGATAGTAGAGGACAAATTGATTTACAAGAACAATTTCTTTTAGATGTCCTAAGAACAAAGGTGAAGATACATAGCATTCCGATGGGAACAACTATAATCGAAAAAAGACTTTGTGGAAAAAGGGCACTCGTTGTGTTTGATGATGTGTCTAAGTTTGAGCAGTTAAAAGCTCTATGTGGAAATCGTAAATGGATTGGTGAAGGAAGTGTAATAATCATTACAACTAGAGATATACGCCTACTTACACAACTTAAGGTTGACTACGTTTATAAAATGGAGGAAATGGATGAAAATGAGTCACTTGAGCTCTTTAGTTGGCATGCTTTTGGGGAAGCAAGTCCAAGAAAAAACTTGATTGAACTCTCACAAAATATTGTTGCTTACTGTGGAGGACTACCACTAGCTCTCGAAGTCCTTGGATCTTACTTAAATGAGAGGACGAAACAAGAATGGGAAAGTGTATTATCAAAACTAAAAATAATTCCCAATGATCAAGTTCTACAGAAACTAAGAATAAGCTTAGATGGTTTACGTGATCAGATGGAAAGGGATATATTTCTTGACATATGTTGTTTCTTTATCGGTAAAGACAGAGCCTATGTTACAGAGATATTAAATGGCTGTGGACTTCATGCTGATATTGGAATAACAGTGTTGATAGAAAGGTGCCTCATAAAAGTTGCAAAGAATAACAAGCTTGGAATTCATGGTTTGCTACGTGATATGGGAAGAGAAATTGTCCGTCAAAGTTCACCAGAGGAACCTGAGAAGCGTAGTCGTTTGTGGGTTCATGAGGAAGCACTTGACGTATTAAGGGAACATACTGGAACAAAGGCTATTCAGGGATTGGCTTTTAAGTTGCAAGGAACTAATGGAGGTTGCTTCGGTACCAAAGCATTTGAGAAAATGAAGAGTCTGAGACTTCTGCAACTTCATTGTGTAAAACTTGATGGAGATTATGAGTATCTTCCCAAGCACCTGAGATGGGTCTATTGGCAGGGATTTCCTTTAAAATACATACCTGACAAATTTTATCTGGAAAAAGCAGTTGCTATCAGCTTAAAGCATAGTAATCTTAAACTAGTATGGAAGAAGCCCCAGTTGCTGGAGATGCTAAAAATCCTCAATCTCAGTCATTCCAAGGACTTGACAAACACCCCTGACTTTTCAAAACTACCGAATCTAGAAAAGCTCATTCTCAAGGATTGTCCAAGTTTGTCCGAGGTACACCAATCCATTGGAGATCTAAGTAAACTTCTTCTGATAAATTTGAAGGACTGTACAAGCCTTAGCAATCTCCCAAGAAGGATCTATGAGTTGAAATCTGTGAAAACTCTGATCATTTCTGGTTGTTCAAAGATTGACAAATTAGAAGATGATACAGAGCAAATGGAATCATTGACAACTCTAATAGCAAAAGATACAGCTATAGAAGAATTGCCCCGTATTATAGTAAGATCGAAAAGCATTGGATATATATCCCTATGTGGATATGAAGGATTATCACGTGATATTTTTCCTTCTCTCATTTTTTCTTGGATGTCACCAACAAAGGTGATTCCCCCATTCAGGGGCATGTTGTTATCTTCTCTAATTCCCATTGATGTGCAGAACAATAATTTGGGCTATCTATCATCAATGCTTTCGAATCTTTCGAAGCTTCGAAGTGTTTTGGTGCAATGCAGCTCCGAGTTTCATTTGACTCAAGAATTAAGAAGAATCCTAAATTTTACTGAATCGAACACAACATCATATGCATCATCACAAATTTCAGGTCTTTCATTGAGATCGCTTTCTATTGGAATGGGAAGTTACCATATGGTCATCGATATTCTTGAGGAGAGCTTATCACAGGGATTGACAAACAATGCTTCCAATGATATTTTCCTTCCAGGTGATAATTGTCCTTATTGGCTAGCTTATACAGGTGAAGGACATTCAGTGTTTTTTCAAGTGCCTTCGGATAGTGATTTTCACATGAAGGGAATGATTTTATGTGTTGTTTATTCATCAAACCCTAAAAACATGGTAGTTAAAAATGTTGGAAGTGTCTTAATTAGTAATTACACAAAGTCCACCATCCTAATATACAAGGGAGACATAGCACTGTCCTTTAATGATGAAGATTGGACGGCGGTTATATCAAATCTAGGAGCAGGTGACAATGTTGAGATCTTTGTAACATTTGAGAATGGAATGACTGTTAAGGAGACAGCTGTGTACCTAATATGTGGCCAGTCAATTATTGTCGAAATGGAGCCATCACCTGAATTGAACGCACAACCATCCTCTAATGTGAAATTGGAGCCATCACCGAAGCCTAGTGAAAATATCTTCACAATACTTATCAAGAGAATGGGAGAATGTTTAGGCTTGAAGTGGAACTGA 3141 0.3865 MSSSSSKIPQWVYDVFLSFRGEDTRTTFVSYLYNTLSRSGINTYIDERLQRGTEVGPELLRAIEGSQISLVVFSENYAGSFWCLDELTKIMECRRTYGHVMLPIFYNVDPSHVREQTGAFGKAFEKISDNVPSQDVLSSWRRALTEAGNVSGWDNMNYWGAAYLVEKIVPEVLGKLNNTVLSITDFPVGLESRVQEVIGFIENQSSKVCMVGIWGMGGSGKTTTAKAIFNQIHRKFVDRSFIENIREVCEQDSRGQIDLQEQFLLDVLRTKVKIHSIPMGTTIIEKRLCGKRALVVFDDVSKFEQLKALCGNRKWIGEGSVIIITTRDIRLLTQLKVDYVYKMEEMDENESLELFSWHAFGEASPRKNLIELSQNIVAYCGGLPLALEVLGSYLNERTKQEWESVLSKLKIIPNDQVLQKLRISLDGLRDQMERDIFLDICCFFIGKDRAYVTEILNGCGLHADIGITVLIERCLIKVAKNNKLGIHGLLRDMGREIVRQSSPEEPEKRSRLWVHEEALDVLREHTGTKAIQGLAFKLQGTNGGCFGTKAFEKMKSLRLLQLHCVKLDGDYEYLPKHLRWVYWQGFPLKYIPDKFYLEKAVAISLKHSNLKLVWKKPQLLEMLKILNLSHSKDLTNTPDFSKLPNLEKLILKDCPSLSEVHQSIGDLSKLLLINLKDCTSLSNLPRRIYELKSVKTLIISGCSKIDKLEDDTEQMESLTTLIAKDTAIEELPRIIVRSKSIGYISLCGYEGLSRDIFPSLIFSWMSPTKVIPPFRGMLLSSLIPIDVQNNNLGYLSSMLSNLSKLRSVLVQCSSEFHLTQELRRILNFTESNTTSYASSQISGLSLRSLSIGMGSYHMVIDILEESLSQGLTNNASNDIFLPGDNCPYWLAYTGEGHSVFFQVPSDSDFHMKGMILCVVYSSNPKNMVVKNVGSVLISNYTKSTILIYKGDIALSFNDEDWTAVISNLGAGDNVEIFVTFENGMTVKETAVYLICGQSIIVEMEPSPELNAQPSSNVKLEPSPKPSENIFTILIKRMGECLGLKWN 1046
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi70g00012 1046 SMART till_3 12 150 IPR000157 GO:0007165
Gabi70g00012 1046 Pfam TIR domain 13 185 IPR000157 GO:0007165
Gabi70g00012 1046 SUPERFAMILY "Winged helix" DNA-binding domain 416 522 IPR036390 -
Gabi70g00012 1046 SUPERFAMILY L domain-like 502 819 - -
Gabi70g00012 1046 PRINTS Disease resistance protein signature 287 301 - -
Gabi70g00012 1046 PRINTS Disease resistance protein signature 210 225 - -
Gabi70g00012 1046 PRINTS Disease resistance protein signature 618 634 - -
Gabi70g00012 1046 PRINTS Disease resistance protein signature 380 394 - -
Gabi70g00012 1046 FunFam Disease resistance protein (TIR-NBS-LRR class) 9 178 - -
Gabi70g00012 1046 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 13 808 IPR044974 GO:0006952
Gabi70g00012 1046 ProSiteProfiles TIR domain profile. 11 176 IPR000157 GO:0007165
Gabi70g00012 1046 Gene3D - 345 429 IPR042197 -
Gabi70g00012 1046 Pfam NB-ARC domain 191 410 IPR002182 GO:0043531
Gabi70g00012 1046 SUPERFAMILY Toll/Interleukin receptor TIR domain 2 153 IPR035897 -
Gabi70g00012 1046 Gene3D - 7 179 IPR035897 -
Gabi70g00012 1046 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 177 440 IPR027417 -
Gabi70g00012 1046 Gene3D - 180 340 IPR027417 -
Gabi70g00012 1046 Gene3D Ribonuclease Inhibitor 533 870 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi70g00012 Gabi-Chr70 87894 99580 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi70g00012 13 735 WRKY Transcription Factor Family AT4G12020 30.552 5.00e-81 288
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi70g00012 - - gmx:100813173 1291.56