LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gabi709g00011	ATGCAAGAATCTGAGGAAGAAAATCCTGACCTTCCTCCCAATTCAAAGCCACAGGAGGAACATGGGTTTGCCATGGATTTTGATATTGACCTGGAAAGTTCATGGCCCTTGAATCATATATCTTTTCTCTCTAACCCCATGTCTCCTATTCTCTTATCCAACATCTCTGAACAACCTTTGTCTCCTCTCTTGGCTTTTTCTGATGTTGAAGATGACAGGCATGTCATGATTGCAGCTTCAGGTAATACAAATACAGTAACTGAAAATGCAGTTGAAAATGATGACAACAAAAAAATTGTGTCACCCCTTGTAGCTCTACCACCTTTAGAAACCCCATATGGTTATTGTCTAATCAAGGAAAGAATGACACAAGCACTTCGCTACTTCAAAGAGTTGACTGACCAAAATGTTCTGGCTCAGATTTGGGCACCTGTGAGGAATGGGAATAGGTATGCACTTACAACTTCAGGACAACCATTTGTTCTTGATCCACATAGTAATGGACTACATCAGTATCGAACGGTTTCCTTGTTGTATATGTTTTCTGTGGATGGGGAGAATAATGAAATACTGGGACTTCCTGGTCGGGTTTTCCAGCAGAAAATACCAGAATGGACACCCAATGTTCAGTATTATTCTAGTAAAGAGTATCCACGCCTAAATCATGCTCAACATTACAATGTTCGTGGAAGCTTGGCTCTGCCTGTGTTTGAACCTCCAGGGAAGTCATGTGTTGCAGTACTGGAGTTGATAATGACTTCACAGAAGATTAACTATGCTCCTGAGGTTGATAAAGTCTGCAAAGCCCTTGAGGCAGTTAATTTAAGGAGTTCAGAAATTTTGGAGCATCCATACATTCAGATTTGCAATGAAGGCCGCCAGAAAGCTTTTGCAGAGATTTTGGAGATATTTACAGTCATGTGTGAAACTCATAATTTACCATTGGCACAAACATGGGTTCCCTGTAGGCATAGGAGTGTTTTGACCCATGGTGGTGGTCTTAAGAAAAGTTGCTCTAGTTTTGATGGTTGTTGCATGGGGCAAGTTTGCATGTCTACAACTGAGGTAGCTTTCTATGTCATAGATGCTCACACATGGGGGTTCCATGAGGCTTGTATTGAGCATCACTTACAACAAGGTCAAGGGGTTGCTGGGAGGGCATTTTTGTCCCACAACATGTGCTTCTGTGGAAACATTACCCAATTTTCCAAAACTGATTATCCCTTAGTACATTATGCTCTTATGTTTGGGTTAACCAGCTGTTTTGCAATCTGTTTACAAAGTTCTCATACTGGAAATGATGATTATGTATTAGAGTTTTTTTTGCCTCCTATGATCACAAACTTTTATGAACAAAAAACTTTGTTGGGATCCATATTGGCAACAATGAAGCAACATTTCCAGAGTCTTAAGATTGCTGGTGGTGGTGAACTTGATGAGAATGGTTCAATTGAAATTATAGAAGCAATAAATGGAAGAGTTCATTTGAGGCTTGAATGTATTCCAATTACTCCATCTGCTAAATCACCACCTAGACCTGATGCCTCACCAAATATGGGGGTGGGGGTGCCACTAGGTACATTAGAACAGCAAATAATGACATACTTTGATGACATAAATGATGGTGGAAATCTTGGTCAAAATGCAGGTGGAAGCATTGATAAGATCTCTTCCTTAGAGACCAAAATAAAAAAGAAACCCTCAGAAAGAAAACGTGCAAAAGCTGAGAAATCAATTAGTCTTGAAGTTTTGCAAAGTTATTTCACTGGGAGTCTTAAGGAAGCCGCGAAGAGCCTTGGTGTTTGCCCTACTACAATGAAGCGCATCTGTAGGCAGCATGCGATACCCCGTTGGCCATCTCGAAAGATCAAAAAGGTTAACCGTTCACTGTCCAAGCTCAAGTGTGTTATGGAATCAGTCCATGGTGCTGAAGGAGCATTTGATTTGAATTCTGTAAGTACAAGTTCACTTCACATTGCTGCTGGTTCCTTTACTGAGCCTTCTACTTCAAACAAGTTCAACCACCAAGCCTCATTAAGCATTAGGCCATCAGAACCTAAGATGAATGAAAATGATTTGGATGCCTCTAGAGTTTCAGAAACAAACAGACAGATTGGTATGAAAGATCAATTACTAGGAGCAAGGACACAAAGTCCTGAGAAGGTGATTAATGACAAAGGTGGGTTCACTCAGGAGGTTGGCACTAACAGGTTTAGAATTGGGAGTGGCTCAAATGAAGGCTGTGGACATGCAAATCCTACTCCTCATGGTTCATGCCATGGTACTCCCCCAAATGAAAGTTCCCCTGCAAAAGATGTATTTATAACATGCAACAGTAAGCAATGTCTTGTGTTAGAGTCAACAGTTCAGTTAACTGGTACACTGAACTGTGCAACTGCATACCCTATGCCTAATGTTGTGACAACAGAACCCCAAGAACCATTTGGAGGAATGCTAACTGAGGATGCAGGTAGTTCTAAAGACTTGAGAAATCTGTGTCCTCCTGCAGATGCTGTTTTGAAGGATCAGGTTCTAAAAGCTTGTGGGATTAATCCTCCATGTTCTGATTTGGCTTCTATGCAATGCAAAAATACTCTTAATAACACTTTGACACCTTTTGTAGCTGGGAAAGAGATGAAGCCTGTGACTATTAAGGCAACATATAAAGAAGATATTGTAAGGTTCAGGGTCTCTTTGAACTGTGGCATTGTGGAATTGAGAGAAGAAATTGCCAAAAGATTGAAGCTAGAGGTGGGTACATTTTATATCAAGTATATGGATGATGATCATGAATGGGTTTCGATAGCCTGTGATGCAGACCTGCAGGAGTGCATGGACATTTTAGGATCATTAGGCAGCAACATAATCAGGCTTGTGGTGCATGATACAGTGTCCATTCTTGGAAGCTCATGTGAGAGCTCAGGGGGGAGTGAGTAG	2937	0.4099	MQESEEENPDLPPNSKPQEEHGFAMDFDIDLESSWPLNHISFLSNPMSPILLSNISEQPLSPLLAFSDVEDDRHVMIAASGNTNTVTENAVENDDNKKIVSPLVALPPLETPYGYCLIKERMTQALRYFKELTDQNVLAQIWAPVRNGNRYALTTSGQPFVLDPHSNGLHQYRTVSLLYMFSVDGENNEILGLPGRVFQQKIPEWTPNVQYYSSKEYPRLNHAQHYNVRGSLALPVFEPPGKSCVAVLELIMTSQKINYAPEVDKVCKALEAVNLRSSEILEHPYIQICNEGRQKAFAEILEIFTVMCETHNLPLAQTWVPCRHRSVLTHGGGLKKSCSSFDGCCMGQVCMSTTEVAFYVIDAHTWGFHEACIEHHLQQGQGVAGRAFLSHNMCFCGNITQFSKTDYPLVHYALMFGLTSCFAICLQSSHTGNDDYVLEFFLPPMITNFYEQKTLLGSILATMKQHFQSLKIAGGGELDENGSIEIIEAINGRVHLRLECIPITPSAKSPPRPDASPNMGVGVPLGTLEQQIMTYFDDINDGGNLGQNAGGSIDKISSLETKIKKKPSERKRAKAEKSISLEVLQSYFTGSLKEAAKSLGVCPTTMKRICRQHAIPRWPSRKIKKVNRSLSKLKCVMESVHGAEGAFDLNSVSTSSLHIAAGSFTEPSTSNKFNHQASLSIRPSEPKMNENDLDASRVSETNRQIGMKDQLLGARTQSPEKVINDKGGFTQEVGTNRFRIGSGSNEGCGHANPTPHGSCHGTPPNESSPAKDVFITCNSKQCLVLESTVQLTGTLNCATAYPMPNVVTTEPQEPFGGMLTEDAGSSKDLRNLCPPADAVLKDQVLKACGINPPCSDLASMQCKNTLNNTLTPFVAGKEMKPVTIKATYKEDIVRFRVSLNCGIVELREEIAKRLKLEVGTFYIKYMDDDHEWVSIACDADLQECMDILGSLGSNIIRLVVHDTVSILGSSCESSGGSE	978

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gabi709g00011	978	MobiDBLite	consensus disorder prediction	1	21	-	-
	Gabi709g00011	978	Gene3D	-	878	965	-	-
	Gabi709g00011	978	PANTHER	PROTEIN NLP8	59	975	IPR045012	GO:0003700
	Gabi709g00011	978	SUPERFAMILY	CAD & PB1 domains	879	966	-	-
	Gabi709g00011	978	CDD	PB1_NLP	882	962	IPR034891	-
	Gabi709g00011	978	SMART	PB1_new	881	963	IPR000270	GO:0005515
	Gabi709g00011	978	Pfam	RWP-RK domain	578	626	IPR003035	-
	Gabi709g00011	978	ProSiteProfiles	PB1 domain profile.	881	963	IPR000270	GO:0005515
	Gabi709g00011	978	Pfam	PB1 domain	881	962	IPR000270	GO:0005515
	Gabi709g00011	978	ProSiteProfiles	RWP-RK domain profile.	563	646	IPR003035	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gabi709g00011	Gabi-Chr709	105569	110228	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gabi709g00011	252	975	NLP Transcription Factor Family	AT4G24020	51.573	0.0	649

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	RWP-RK	Gabi709g00011		PB1	3.8e-20	CL0072

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gabi709g00011	-		-	gmx:100780901	1528.84