Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi709g00008 ATGGGCAAATTAGAAGTGAGATTGTATGGCAACCATGTTTGGTTGAACCGATTCCACAGTTGCCTACCTAAATCATTATATGACCAGGTACCCTCTATTAAGTGTGCGAAAGTGAAAATCTCAGTACCAAGGGAAGGTGAAGGAAGGGAAAAGAACAATGAAGAAGGGAACAATATTGAATGGGAACAGTTAAGGGAAGAAGCAACATCAGTAGCAGCTGCTCTACTTGGAGCTCGAAGTGCAAGAAAACGTTACATTGGGGTGCGCCAAAGATCTTCAGGGAGATGGGTGGCTGAGATCAAAGACACCATTCATAACATTAGACTATGGTTAGGTACTTATGACACTGCTGAAGATGCTGCTAGAGCTTATGATGAAGCAGCTCGTTTGCTTCGTGGTGCTAACACTCACACAAATTTCTTTCATTCCCACTAA 435 0.4276 MGKLEVRLYGNHVWLNRFHSCLPKSLYDQVPSIKCAKVKISVPREGEGREKNNEEGNNIEWEQLREEATSVAAALLGARSARKRYIGVRQRSSGRWVAEIKDTIHNIRLWLGTYDTAEDAARAYDEAARLLRGANTHTNFFHSH 144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi709g00008 144 PRINTS Ethylene responsive element binding protein signature 107 123 IPR001471 GO:0003700|GO:0006355
Gabi709g00008 144 PRINTS Ethylene responsive element binding protein signature 85 96 IPR001471 GO:0003700|GO:0006355
Gabi709g00008 144 ProSiteProfiles AP2/ERF domain profile. 84 141 IPR001471 GO:0003700|GO:0006355
Gabi709g00008 144 FunFam ethylene-responsive transcription factor RAP2-11 83 142 - -
Gabi709g00008 144 CDD AP2 83 140 IPR001471 GO:0003700|GO:0006355
Gabi709g00008 144 SUPERFAMILY DNA-binding domain 84 142 IPR016177 GO:0003677
Gabi709g00008 144 SMART rav1_2 84 144 IPR001471 GO:0003700|GO:0006355
Gabi709g00008 144 Gene3D AP2/ERF domain 83 142 IPR036955 GO:0003700|GO:0006355
Gabi709g00008 144 Pfam AP2 domain 84 133 IPR001471 GO:0003700|GO:0006355
Gabi709g00008 144 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 36 141 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi709g00008 Gabi-Chr709 74018 74566 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi709g00008 78 140 AP2-EREBP Transcription Factor Family AT5G19790 66.667 3.30e-26 97.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Gabi709g00008 AP2 9.6e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi709g00008 K09286 - gmx:100793940 130.183