Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi708g00009 ATGAAGAACAGAAAGCTCTTCAAACGTAAAGAGAAAATTTTTGCACAAAATGGTGGCATATTGTTACAACAACTGTTAGCTAAGCATGGAGGATCAAGTGAAACAGCGAGAGTTTTTAGTGAGGAGGAAATCAAGGAGGCCACCAACAACTTTGATGAACGAAGGGTCCTTGGCCAAGGGTATTATGGAAAAGTTTACAAAGGAGAATTACTTGATAATAGAATGGTAGCTATAAAAAGGTCCAAAATCAATAACCCAATCCAGATTGAGCAGTTCATCAATGAGGTATATGTGCTTTCCCAAATCAACCATAGGAACGTGGTAAAGCTCTTGGGGTGTTGTTTAGAGACAGAACTTCCCTCGCTTGTCTATGAATTCATTCCTAATGGTACCATTTCTCAGCATCTTCATGATCAAACCCAATCTTTTATAAGACTCTCATGGGAAACACGATTGAGAATAGCAAAAACTGCTGGAGCCCTTGCATACTTGCATTCTGCTGCTTCAACACCAATCATACACAGAGATGTGAAAACTTCTAATATACTACTAGATTCTGATCTCACTGCAAAGGTTTCGGATTTTGGAGCTTCAAGGTTTATTCCTCTTGATCAAACTGAGTTAACCACTTTTGTGCATGGGACTCTAGGGTATCTTGACCCTGAATATGTCAACACGGGCAAATTAACTGTGAAGAGCGACGTTTATAGCTTTGGGGTTGTTCTAGCAGAGCTAGTCACAGGTAAGAAGGCACTTTCTTTAAGCAGGCCTGAGAGTGATAGAAATCTAGCAATGTACTTTGTTTCTTCAATGAATGATGGAAGGTTACTCGCAATTGTGGATAACAAAATAAAAAATGAGGCAAATATTGTTGAGCTTGAGCAAGTATTGGAAATTGCCAATATCACAAAATGTTGTTTAAGTGAGAAGGGTAAGAAAAGGCCTACCATGAAGGAAGTTGCAATGGAACTTGAAGGACTGAGAATATTAATGATAAAGAACAGACAGGAAAGTGTCGAAATGTCTTCAGATGAGACAGGGCACTTTCTCAATGATGATTTGTTTCCTTACAATGTTGACATCGAAGCTGGAGTTGGTTCAAGTGGTGTAAATTCTGGGATGTATAGCTTAAACCAGGTTTCCATGATATTGAGTGGCAGAAGATAA 1167 0.389 MKNRKLFKRKEKIFAQNGGILLQQLLAKHGGSSETARVFSEEEIKEATNNFDERRVLGQGYYGKVYKGELLDNRMVAIKRSKINNPIQIEQFINEVYVLSQINHRNVVKLLGCCLETELPSLVYEFIPNGTISQHLHDQTQSFIRLSWETRLRIAXKTAGALAYLHSAASTPIIHRDVKTSNILLDSDLTAKVSDFGASRFIPLDQTELTTFVHGTLGYLDPEYVNTGKLTVKSDVYSFGVVLAELVTGKKALSLSRPESDRNLAMYFVSSMNDGRLLAIVDNKIKNEANIVELEQVLEIANITKCCLSEKGKKRPTMKEVAMELEGLRILMIKNRQESVEMSSDETGHFLNDDLFPYNVDIEAGVGSSGVNSGMYSLNQVSMILSGRR 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi708g00009 389 ProSiteProfiles Protein kinase domain profile. 51 332 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi708g00009 389 SMART serkin_6 51 333 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi708g00009 389 FunFam Wall-associated receptor kinase 2 21 126 - -
Gabi708g00009 389 FunFam Wall-associated receptor kinase 2 127 348 - -
Gabi708g00009 389 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 2 335 IPR045274 GO:0007166
Gabi708g00009 389 Gene3D Phosphorylase Kinase; domain 1 25 126 - -
Gabi708g00009 389 Gene3D Transferase(Phosphotransferase) domain 1 127 349 - -
Gabi708g00009 389 ProSitePatterns Serine/Threonine protein kinases active-site signature. 173 185 IPR008271 GO:0004672|GO:0006468
Gabi708g00009 389 ProSitePatterns Protein kinases ATP-binding region signature. 57 79 IPR017441 GO:0005524
Gabi708g00009 389 SUPERFAMILY Protein kinase-like (PK-like) 35 326 IPR011009 -
Gabi708g00009 389 CDD STKc_IRAK 57 328 - -
Gabi708g00009 389 Pfam Protein tyrosine and serine/threonine kinase 54 325 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi708g00009 Gabi-Chr708 177213 178381 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi708g00009 1 336 Receptor kinase-like Gene Family AT1G21230 58.333 9.48e-129 385
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Gabi708g00009 PK_Tyr_Ser-Thr 6.4e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi708g00009 - - gmx:100798027 493.041