Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi708g00008 ATGGCTATGCAGTCAACGCAGCATCTCCTTCTGCTGCTTCTGGCAATGCTTTTGGCAGTAGAAACAGCAGCACAACCCCTTCCAAACTGCACAAGAAAATGTGGTTCCCTTGAAATTCCCTACCCATTTGGTACAACCGAGGGTTGTTACCTTGACACCCCATTCCTCATCACATGCAACCAAACTTCAGGTTCACCACCCACCCCATTCTTGCAAGGTGGAAAAACAACAGTGCTAAACATCTCACTCGATGGTGAATTGCGTATCTCATTGCAATCAGCTAAAGATTGCTACAATGATAGCGGAGAACCTACAATTTCGGAAACCAGTGGCCTCAAGTTGAGTCACTTTCACCTCTCATCAACCCGAAACAAATTAACTGCCATTGGTTGTGACACGCTTGGACTAATAACTGGCCATGGTTCACAGAAAGACTACAACACAGGATGCGAGTCTTTTTGCAACAGTCTTGTTGAGATCGTAGCTAATGGTACTTGCACTGGCACTGGTTGTTGCGAGGCTTCTATCCCCGAGGGACTATCCACTGTCGTTTTTGAATCTTCAAGCTCACAAAAAAGACACACTACTGTACACGACTTCAATACATGTGGTTATGCGTTTTTGGTTGAAGAAGGAGCTTACAACTTCGTGTCCACAGATATTGTAAACTTGCAGAGGACAATGTTTCCTGTGGTGGTGGATTGGTCAGTGGGGAAACAAACATGCGAGGAAGCAAAGAAAAACCTTTCTAGCTATGCGTGTATCGCAGAAAACAGTTACTGCTCCAATTCAAAGAATGGACCTGGCTACCGTTGCCACTGCTCTGATGGTTTTCAGGGAAACCCTTACCTTCTTGATGGCTGTGAAGAAACTAATAAATGCTTGGAATCCAACAATTGCATTGATGGAGCAATATGCCACAACTTCCGCGGGGGCTACTATTGTTCGTGCCCCAAAGGACACAAAGGAGATGGGAAAATTGATGGAACCGGTTGCCTTCTCAAATCAAGTACTAATTCAAGGACATTTATCAGTCTGATAATTGCATTGGGTGTAGTGATTATAATCGTAATTTGTGTGTATTGGTGGATGAAGAACAGAAAGCTCTTCAAACGTAAAGAGAAAATTTTTGCACAAAATGGTGGCATATTGTTACAACAACTGTTAGCTAAGCATGGAGGATCAAGTGAAACAGCGAGAGTGTTTAGTGAGGAGGAACTCAAGGAGGCCACCAACAACTTTGATGAACGAAGGGTCCTTGGCCAAGGGTATTATGGAAAAGTTTACAAAGGAGAATTACTTGATAACAGAATGGTAGCTATAAAAAGGTCCAAAATCAATAACCCAATCCAGATTGAGCAGTTCATCAATGAGGTATATGTGCTTTCCCAAATCAACCATAGGAACGTGGTAAAGCTCTTGGGGTGTTGTTTAGAGACAGAACTTCCCTCGCTTGTCTATGAATTCATTCCTAATGGTACCATTTCTCAGCATCTTCATGATCAAACCCAATCTTTTATAAGACTCTCATGGGAAACACGATTGAGAATAGCAACAGAAACTGCTGGAGCCCTTGCATACTTGCATTCTGCTGCTTCAACACCAATCATACACAGAGATGTGAAAACTTCTAATATACTACTAGATTCTGATCTCACTGCAAAGGTTTCGGATTTTGGAGCTTCAAGGTTTATTCCTCTTGATCAAACTGAGTTAACCACTTTTGTGCAAGGGACTCTAGGGTATGTTGACCCTGAATATGTCAATACGGGCAAATTAACTGTGAAGAGCGACGTTTATAGCTTTGGGGTTGTTCTAGCAGAGCTAGTCACAGGTAAGAAGGCACTTTCTTTCAGCAGGCCTAAGAGTGATACAAATCTAGCAATGTACTTTGTTTCTTCAATGAATGATGGAAGGTTACTCGCAATTGTGGATAACAAAATAAAAAATGAGGCAAATATTCTTGAGCTTGAGCAAGTATTGGAAGTTGCCAATATCACAAAACGTTGTTTAAGTGAGAAGGGTAAGAAAAGGCCTACCATGAAGGAAGTGGCAATGGAACTTGAAGGACTGAGAATATTAATGATAAAGAACAGACAGGAAAGTGTCGAAATGTCTTCAGATGAGACAGGGCACTTTCTCAATGATGATTTGTTTCCTCACAATGTTGACATCGAAGCTGGAGTTGGTTCAAGTGGTGTAAATTCTGGGATGTATAGCTTAAACCAGGTTTCCATGATATTGAGTGGCGGAAGATAA 2259 0.4188 MAMQSTQHLLLLLLAMLLAVETAAQPLPNCTRKCGSLEIPYPFGTTEGCYLDTPFLITCNQTSGSPPTPFLQGGKTTVLNISLDGELRISLQSAKDCYNDSGEPTISETSGLKLSHFHLSSTRNKLTAIGCDTLGLITGHGSQKDYNTGCESFCNSLVEIVANGTCTGTGCCEASIPEGLSTVVFESSSSQKRHTTVHDFNTCGYAFLVEEGAYNFVSTDIVNLQRTMFPVVVDWSVGKQTCEEAKKNLSSYACIAENSYCSNSKNGPGYRCHCSDGFQGNPYLLDGCEETNKCLESNNCIDGAICHNFRGGYYCSCPKGHKGDGKIDGTGCLLKSSTNSRTFISLIIALGVVIIIVICVYWWMKNRKLFKRKEKIFAQNGGILLQQLLAKHGGSSETARVFSEEELKEATNNFDERRVLGQGYYGKVYKGELLDNRMVAIKRSKINNPIQIEQFINEVYVLSQINHRNVVKLLGCCLETELPSLVYEFIPNGTISQHLHDQTQSFIRLSWETRLRIATETAGALAYLHSAASTPIIHRDVKTSNILLDSDLTAKVSDFGASRFIPLDQTELTTFVQGTLGYVDPEYVNTGKLTVKSDVYSFGVVLAELVTGKKALSFSRPKSDTNLAMYFVSSMNDGRLLAIVDNKIKNEANILELEQVLEVANITKRCLSEKGKKRPTMKEVAMELEGLRILMIKNRQESVEMSSDETGHFLNDDLFPHNVDIEAGVGSSGVNSGMYSLNQVSMILSGGR 752
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi708g00008 752 ProSiteProfiles Protein kinase domain profile. 414 695 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi708g00008 752 ProSitePatterns Aspartic acid and asparagine hydroxylation site. 306 317 IPR000152 -
Gabi708g00008 752 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 22 698 IPR045274 GO:0007166
Gabi708g00008 752 FunFam Wall-associated receptor kinase 2 490 711 - -
Gabi708g00008 752 SUPERFAMILY EGF/Laminin 290 324 - -
Gabi708g00008 752 Gene3D Transferase(Phosphotransferase) domain 1 490 705 - -
Gabi708g00008 752 Gene3D Laminin 239 332 - -
Gabi708g00008 752 SMART egfca_6 290 333 IPR001881 GO:0005509
Gabi708g00008 752 ProSitePatterns Protein kinases ATP-binding region signature. 420 442 IPR017441 GO:0005524
Gabi708g00008 752 CDD STKc_IRAK 420 691 - -
Gabi708g00008 752 SUPERFAMILY Protein kinase-like (PK-like) 398 689 IPR011009 -
Gabi708g00008 752 Gene3D Phosphorylase Kinase; domain 1 389 489 - -
Gabi708g00008 752 SMART egf_5 293 333 IPR000742 -
Gabi708g00008 752 SMART egf_5 241 289 IPR000742 -
Gabi708g00008 752 CDD EGF_CA 292 324 - -
Gabi708g00008 752 ProSiteProfiles EGF-like domain profile. 290 324 IPR000742 -
Gabi708g00008 752 Pfam Protein tyrosine and serine/threonine kinase 417 688 IPR001245 GO:0004672|GO:0006468
Gabi708g00008 752 SMART serkin_6 414 696 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi708g00008 752 ProSitePatterns Serine/Threonine protein kinases active-site signature. 536 548 IPR008271 GO:0004672|GO:0006468
Gabi708g00008 752 Pfam Wall-associated receptor kinase galacturonan-binding 30 87 IPR025287 GO:0030247
Gabi708g00008 752 FunFam Wall-associated receptor kinase 2 240 292 - -
Gabi708g00008 752 FunFam Wall-associated receptor kinase 2 384 489 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi708g00008 Gabi-Chr708 139503 142568 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi708g00008 3 734 Receptor kinase-like Gene Family AT1G21250 45.333 0.0 605
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Gabi708g00008 PK_Tyr_Ser-Thr 5.7e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi708g00008 - - gmx:100798027 863.218