Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi707g00019 ATGTACATTTCTATTTTGTGTTGTATATATCATCACAGTGGCAAGTGGTTTATGGATGATAGGGAACTCAAAGTGGTGATGGGTGTTCCACAAACTCCAACCCCTTCTCCACATATGTATCAGCAAGAACTTCAGCTTAAACTTTACCAAGCCTTCATATTCTCAATTCCCATACTCTTTTCCATTATTCTCTTTCTCTTGTTTTACTTGTTCTACCTCAAGAGGAGAGCTTCCTCTCTCTCATCCCCTCCACCCCACACACTTTCCAGGACTCCCAATACACAAACTACATATCCCTATTCTTCTTCCTCAGTAAATCTGAAGGTGCAATTTCTGGACAAACTTCCAAGAATTTTATTTGATGAGGATTTGAGAACAAGGGATTCAGTATGTTGTGTTTGTCTGGGAGAATTTGAGGTGAAAGAAGAGCTGCTACAGATTCCTTATTGCAAGCATGTGTTTCACATAGACTGCATACATAACTGGCTGCAATCAAAGTCCACATGTCCACTTTGTAGATGTTCCATCATACCCACTACAAATTTGCTTAATCCACCACCACCACCACCACCTATTGTATCAGAACCACCCCAACAAGGTGGTATTTCGGGCTCTCCATCACACATCATATCATTGCCTCATCGACTAGAAGATGAAGCTGGTGCTTCCTCAAATATTACCATTTTTCAAGGGAATGGTGTATTAATTAGATGA 714 0.4048 MYISILCCIYHHSGKWFMDDRELKVVMGVPQTPTPSPHMYQQELQLKLYQAFIFSIPILFSIILFLLFYLFYLKRRASSLSSPPPHTLSRTPNTQTTYPYSSSSVNLKVQFLDKLPRILFDEDLRTRDSVCCVCLGEFEVKEELLQIPYCKHVFHIDCIHNWLQSKSTCPLCRCSIIPTTNLLNPPPPPPPIVSEPPQQGGISGSPSHIISLPHRLEDEAGASSNITIFQGNGVLIR 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi707g00019 237 MobiDBLite consensus disorder prediction 78 101 - -
Gabi707g00019 237 FunFam Putative E3 ubiquitin-protein ligase RHA4A isoform A 100 178 - -
Gabi707g00019 237 Pfam Ring finger domain 131 173 IPR001841 -
Gabi707g00019 237 MobiDBLite consensus disorder prediction 80 101 - -
Gabi707g00019 237 PANTHER RING-H2 FINGER PROTEIN ATL16 32 183 IPR044600 GO:0016567|GO:0016740
Gabi707g00019 237 CDD RING-H2_EL5-like 131 173 - -
Gabi707g00019 237 ProSiteProfiles Zinc finger RING-type profile. 131 173 IPR001841 -
Gabi707g00019 237 SMART ring_2 131 172 IPR001841 -
Gabi707g00019 237 SUPERFAMILY RING/U-box 109 185 - -
Gabi707g00019 237 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 94 178 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi707g00019 Gabi-Chr707 148051 149959 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi707g00019 29 178 C3H Transcription Factor Family AT4G10150 38.000 1.73e-33 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi707g00019 K19039 - gmx:100806499 261.536