Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi707g00018 ATGTACATTTCTATTTTGTGTTGTATATATCATCACAGTGGCAAGTGGTTTATGGATGATAGGGAACTCAAAGTGGTGATGGGTGTTCCACAAACTCCAACCCCTTCTCCACATATGTATCAGCAAGAACTTCAGCTTAAACTTTACCAAGCCTTCATATTCTCAATTCCCATACTCTTTTCCATTATTCTCTTTCTCTTGTTTTACTTGTTCTACCTCAAGAGGAGAGCTTCCTCTCTCTCATCCCCTCCACCCCACACACTTTCCAGGACTCCCAATACACAAACTACATATCCCTATTCTTCTTCCTCACCCTGTCGTTTAGATCTGAAGGTGCAATTTCTGGACAAACTTCCAAGAATTTTATTTGATGAGGATTTGAGAACAAGGGATTCAGTATGTTGTGTTTGTCTGGGAGAATTTGAGGTGAAAGAAGAGCTGCTACAGATTCCTTATTGCAAGCATGTGTTTCACATAGACTGCATACATAACTGGCTGCAATCAAAGTCCACATGTCCACTTTGTAGATGTTCCATCATACCCACTACAAATTTGCTTAATCCACCACCACCACCACCACCTATTGTATCAGAACCACCCCAACAAGGTGGTATTTCGGGCTCTCCATCACACATCATATCATTGCCTCATCGACTAGAAGATGAAGCTGGTGCTTCCTCAAATATTACCATTTTTCAAGGGAATGGTGTATTAATTAGATGA 723 0.408 MYISILCCIYHHSGKWFMDDRELKVVMGVPQTPTPSPHMYQQELQLKLYQAFIFSIPILFSIILFLLFYLFYLKRRASSLSSPPPHTLSRTPNTQTTYPYSSSSPCRLDLKVQFLDKLPRILFDEDLRTRDSVCCVCLGEFEVKEELLQIPYCKHVFHIDCIHNWLQSKSTCPLCRCSIIPTTNLLNPPPPPPPIVSEPPQQGGISGSPSHIISLPHRLEDEAGASSNITIFQGNGVLIR 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi707g00018 240 MobiDBLite consensus disorder prediction 80 104 - -
Gabi707g00018 240 FunFam Putative E3 ubiquitin-protein ligase RHA4A isoform A 103 181 - -
Gabi707g00018 240 CDD RING-H2_EL5-like 134 176 - -
Gabi707g00018 240 PANTHER RING-H2 FINGER PROTEIN ATL16 32 186 IPR044600 GO:0016567|GO:0016740
Gabi707g00018 240 SMART ring_2 134 175 IPR001841 -
Gabi707g00018 240 Pfam Ring finger domain 134 176 IPR001841 -
Gabi707g00018 240 MobiDBLite consensus disorder prediction 78 104 - -
Gabi707g00018 240 SUPERFAMILY RING/U-box 112 188 - -
Gabi707g00018 240 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 101 181 IPR013083 -
Gabi707g00018 240 ProSiteProfiles Zinc finger RING-type profile. 134 176 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi707g00018 Gabi-Chr707 148051 149959 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi707g00018 45 197 C3H Transcription Factor Family AT1G33480 45.752 1.94e-33 120
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi707g00018 K19039 - gmx:100806499 264.618