Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi707g00013 ATGGACGATACTGAAACCAATGGAAGAATCGAGGAAACTGTTCGTAGGATTTTGCAAGAATCAGACATGGACGAGATTACCGAGTCCAAGATTCGAAAGCAGGCCTCTAACCAACTTGGCCTCGACCTATCCCAACCCCACTTCAAAGCCTTCGTGAAACAGGTCGTCGAAGCTTTTCTCCAAGAGAAGCAACAAGAGGAAGAAGAAGAGCAACAACAACAAGAGGGAAGTTCCAAGGACAAGGAGTACGATGATGGTGGCGATCTCATCATTTGCAAGCTATCAGAGAAAAGAAGGGTGACGATTCAGGATTTCAGAGGGAAAACATTGGTCTCTATTCGGGAGTTCTATAAAAAAGACGGCAAGGAACTTCCTACTTCCAAAGGAATAAGTTTGACAGAGGAGCAGTGGTCAGCCTTTAAGAAAAATATGCCTGCCATAGAAAAAGCCATTAAGAAAATGGAGTCACGCAGCATATAA 480 0.4396 MDDTETNGRIEETVRRILQESDMDEITESKIRKQASNQLGLDLSQPHFKAFVKQVVEAFLQEKQQEEEEEQQQQEGSSKDKEYDDGGDLIICKLSEKRRVTIQDFRGKTLVSIREFYKKDGKELPTSKGISLTEEQWSAFKKNMPAIEKAIKKMESRSI 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi707g00013 159 MobiDBLite consensus disorder prediction 1 22 - -
Gabi707g00013 159 Gene3D Transcriptional Coactivator Pc4; Chain A 81 157 IPR009044 GO:0003677|GO:0006355
Gabi707g00013 159 SUPERFAMILY ssDNA-binding transcriptional regulator domain 91 153 IPR009044 GO:0003677|GO:0006355
Gabi707g00013 159 Gene3D - 2 63 - -
Gabi707g00013 159 SUPERFAMILY DEK C-terminal domain 3 61 - -
Gabi707g00013 159 Coils Coil 49 80 - -
Gabi707g00013 159 PANTHER RNA POLYMERASE II TRANSCRIPTIONAL COACTIVATOR 4 157 IPR045125 GO:0003713|GO:0060261
Gabi707g00013 159 MobiDBLite consensus disorder prediction 63 86 - -
Gabi707g00013 159 Pfam Transcriptional Coactivator p15 (PC4) 92 143 IPR003173 GO:0003677|GO:0006355
Gabi707g00013 159 ProSiteProfiles DEK C-terminal (DEK-C) domain profile. 4 61 IPR014876 -
Gabi707g00013 159 Pfam DEK C terminal domain 6 60 IPR014876 -
Gabi707g00013 159 PIRSF RNA_polymII_KELP 1 158 IPR017415 -
Gabi707g00013 159 FunFam RNA polymerase II transcriptional coactivator KELP 81 157 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi707g00013 Gabi-Chr707 107866 110113 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Coactivator p15 Gabi707g00013 DEK_C 7.8e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi707g00013 K25815 - gmx:100499671 248.054