Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi707g00005 ATGGAAGGGGATTTCGAGGCGAATGACATGCTCACGCTCACACAGGATCCCTTTGATGCTAACGATAATGATAATTTAGCAACTGAAGGGGAAAGATGTGGAATATGCATGGATATTGTTGTTGACAGGGGAGTTTTGGATTGCTGTCAGCACTGGTTCTGCTTTGTATGCATTGACAACTGGGCTACCATCACTAATCTCTGCCCACTTTGCCAGAATGAGTTTCAGTTGATCACATGTGTTCCAGTATACGATACCATTGGAAGCAATAAAGTTGAAGATGACTCATACTTCAGAGATGATGACTGGTCCATTGAAGGGAAGAACAACACTCTATCATTTCCCTCCTACTACATCGATGAAAATGCAGTTATTTGCTTGGATGGTGATGGCTGCAAAGTTCGAAGTGGATTGGCAACTATTGAAGGAGATTCTGGTCTTGATACATCAATTGCTTGTGATTCATGTGATATATGGTATCATGCCTTCTGTGTGGGATTTGATACTGAAGCTACATCTGACAGTACGTGGTTATGCCCAAGATGTGTGGTTGATGAAGTTTCTAAAGGAACAGATGCCAATTCAATACAGAGGGCAACCGGGGAAAGTAACCCAGAGAATAGTAACAGTGAATGTCATGCTGAGGATTCATTTTCAGGAAAAGTGTGTGTGTCTGTGGCTGATAGTGGAGAGACAGCTGTTGTTGTCTCAATGGTTGACAGAAATACATGGGTTCCAGCAACAAGCGAGAAAGGCCTATTGCCTCTTGAAATTGATGGGGATATGTTGACTGAATCATGTATGTTAATATCTGACACAGATAATCAGCAGAGGGAGACAGAAAAGACAATTATGTCACCAGTCATGGAGGAAGAGGAACTGGAGCTGTCCTTATCGCACAATGTATCCTGTAGCCTAACTTCTAAATCCGTGGTGCATAATGAGTCAAAGAAAAGTGCTAATGGAGCAAGGAGTGAACCAAGTGGCTTTGATGGAACCAAGTTATTTGACGAGTCCCATGTCAAAACTAGTCCATCCAGAAATGAATCTGATATGGGTCTTCATCTTGGTTTGTCGGTGGGCTCTTTTTTATCTGTTGATAATGCGGATAAGAATGAAACAAAAGATCAAGCAACTGATGTCCTATGCTTGAGTCCTGAAGAATTTTTTTCAAAAGGAGATGAAATTGAAACCAATGCTCGGAAGGACAATGCCAGAGTAACTGCTGGAAAGAGAAAGCATGTCGAATGCAGTTATGAGCAAATTCATATAAAAGTTGATGATGGAGATGCCAAGCCTGAACTTCCGGTTGAAGTTTTGCAAAAGAAAATTAGAGCTGCTGGTAGTCAAATGATTAGTGCTAATGACTCAGCTGATGCTCATCTTTCAGACAACGCTAAAAAATACCCTGCTTTAAAACATTCTCCAACAAAGGAGATTGTCACATCAGATATAATGAATATAGTTAAAGGGTCGAACCGGAGGCTTTCCAAGGGACTTGCTGGAACTAATGCTTTTGACAAGTTATCTGAAAAGAAAGAAAATATGGATGGGTTGAGGGTTAAAAAGATCATGAAGAGAGTTTCTGATGATGGAGAATCATCCTTGGTAGTTCAAAATCTAAGGAAGGAAATTAGAGAAGCTGTCCGTAACAAATCCTCCATAAACTTTGAGGATAACAATTTTGATACAAAGCTTCTTGAAGCATTTAGGGCTGCTATAGCAGGGCCTAAAACTGAACCTGTAAGTAAGTTATCTCCCTCAGCTGTAAAGGCAAAGAAGTCAATGTTGCAGAAAGGAAAAGTACGTGAACATCTAACAAAGAAAATTTTTGGGACTTCAAATGGCAGAAGAAAGCGTGCATGGGACAGGGACTGTGAAATTGAGTTTTGGAAATATCGTTGCATGAGAGCTTCAAAGCCTGAAAAGATCGAAACTTTAAAATCAGTTCTTGATCTACTAAGAAAAAGTTCGGAGAGCCCAGAATCAAATCAAGCTCCTGAACGTCAGGCCAAGAGTCCTATACTTTCCAGATTGTATTTAGCAGATACATCTGTTTTTCCACGGAAAGAGGATGTCAAACCTCTCTCTCTACTTAAAACCATTGCTAGCTCAGAGCAGACTAAACAAAATAACCCATCAGGAAAAGTATCAAATCTATCTCTTGATAACAATATTATAAAAGCAACACAGATAAATAATCTTTTATCAAAGACCAAAGTCTGTTCATCTGAAAAAAAAGTAGATAAGAAGATTGTACATGGCTCAGTTGATGATAATTCAGCTTCTGGTAAAGCACGTTTGAGAAGTCCCACAAAAGGGGCATCAGTTTCATCAGCTGGTGCCAAAGTTGGCACAAAGGAGTTAGGCCTAAAATCTGATTCTATAAAGATTGATAAAAGAAAATGGGCCTTAGAGGTTCTTGCGAGGAAAACAGCTGCTGCAAGCAGGAACACAGCAAATGAAAATCAGGAAGATGATGCAATTTTTAAAGGAAATTATCCTTTGCTGGCCCAATTACCAGCTGATATGAGACCAGTACTGGGACCTTGTCGCCACAATAAAATTCCTATATCAGTGAGGCAGACACAACTTTACCGCCTGACAGAGCGCTTATTGAGGAACACAAACCTGCCAGTCATTCGCAGAACTGCAGATACAGAATTGGCTGTTGCAGATGCAATTAATATTGAAAAGGAGGTTGCTGACAGATCAAGCAGCAAGCTTGTGTATCTAAACCTTTGTTCACAAGAGCTCTTGCATCGCGCAAATAACACAAAATCCAATGTACCTGCCTCATCAGCAGTGCTCACTGATCAATCAGAACAAAATGCTGATGATCTTTCAAATGATCCTGCAGTTGAAATAGCATTGAAAGATGCTGGTCTATTGTCTGATTCGCCACCTAGCAGTCCACATAAGAACAGAGAAATATGTAATGAAGATGATATGTCAGGGCCGGATAATATACTTGAACTGGATTCTCATCCTGATCTGGATATTTATGGTGATTTTGAGTACGATTTGGAGGATGAAGATTACATTGGTGCTAGTTTTACAAAGGTCTCAAACCCAAAACAAGAGCAAAGTGAGTCAAAAGTGAAACTTGTTTTCTCCACCATGAACTTGAAAAAGTCAGATAATGCTTTGGATTGTCCAGACTGTGAGGGGTCTGAAAACAATGAAGTGTCAGGAGATGCTTCCTGCTCTCCAAACTGTCACAATAATGCAGTGCATAGGGATTCTACAATTGATGCAGAGATTGGCCAGCCTTCTGTTTCTTCTGAGCTCCCACATTGTGAGGGTGCTGTTGAGCCAGTTGATTCAGAATTTGAAGAATTATATGGCCCTGACAAAGAACCACTTATAAAATTTTTTCCAGATGGTGAATCAAGATCATTATTACGTGGAGAGGACAAGACAGAAACTCTAAGTGAGGTCAATGACTGCCATAATGACGTAAAACACGTCTTAGACAAAGCAGTAAATGTTTCGAAATTTGGGCATGAGAATCTCACAGAGAATGTGTTTGTCACTGCCAGCACTGACAAATCTAATATAGCTGAGGCGGGGGAAAATTCCCGAAGGAAGGAAGAGAAATCTGACATCACTTCCAAGCAGTCGGACTCTGTAAATCATGTTACTAGGAAGGTAGAAGCCTACATCAAGGAGCATATCAGGCCACTGTGCAAGAGTGGTGTGATCACGGCTGATCAATACAGGTGGGTTGTTGCAAAAACAACTGATAAGGTTATGAAGCATCATTGCAAAGCAAAGAATGCTAATTTCCTCATAAAGGAAGGTGAGAAAGTAAAGAAACTTGCAGAGCAGTATGCTGAAGCAGCCCAACAGAATAGAAAAAATTGA 3867 0.4037 MEGDFEANDMLTLTQDPFDANDNDNLATEGERCGICMDIVVDRGVLDCCQHWFCFVCIDNWATITNLCPLCQNEFQLITCVPVYDTIGSNKVEDDSYFRDDDWSIEGKNNTLSFPSYYIDENAVICLDGDGCKVRSGLATIEGDSGLDTSIACDSCDIWYHAFCVGFDTEATSDSTWLCPRCVVDEVSKGTDANSIQRATGESNPENSNSECHAEDSFSGKVCVSVADSGETAVVVSMVDRNTWVPATSEKGLLPLEIDGDMLTESCMLISDTDNQQRETEKTIMSPVMEEEELELSLSHNVSCSLTSKSVVHNESKKSANGARSEPSGFDGTKLFDESHVKTSPSRNESDMGLHLGLSVGSFLSVDNADKNETKDQATDVLCLSPEEFFSKGDEIETNARKDNARVTAGKRKHVECSYEQIHIKVDDGDAKPELPVEVLQKKIRAAGSQMISANDSADAHLSDNAKKYPALKHSPTKEIVTSDIMNIVKGSNRRLSKGLAGTNAFDKLSEKKENMDGLRVKKIMKRVSDDGESSLVVQNLRKEIREAVRNKSSINFEDNNFDTKLLEAFRAAIAGPKTEPVSKLSPSAVKAKKSMLQKGKVREHLTKKIFGTSNGRRKRAWDRDCEIEFWKYRCMRASKPEKIETLKSVLDLLRKSSESPESNQAPERQAKSPILSRLYLADTSVFPRKEDVKPLSLLKTIASSEQTKQNNPSGKVSNLSLDNNIIKATQINNLLSKTKVCSSEKKVDKKIVHGSVDDNSASGKARLRSPTKGASVSSAGAKVGTKELGLKSDSIKIDKRKWALEVLARKTAAASRNTANENQEDDAIFKGNYPLLAQLPADMRPVLGPCRHNKIPISVRQTQLYRLTERLLRNTNLPVIRRTADTELAVADAINIEKEVADRSSSKLVYLNLCSQELLHRANNTKSNVPASSAVLTDQSEQNADDLSNDPAVEIALKDAGLLSDSPPSSPHKNREICNEDDMSGPDNILELDSHPDLDIYGDFEYDLEDEDYIGASFTKVSNPKQEQSESKVKLVFSTMNLKKSDNALDCPDCEGSENNEVSGDASCSPNCHNNAVHRDSTIDAEIGQPSVSSELPHCEGAVEPVDSEFEELYGPDKEPLIKFFPDGESRSLLRGEDKTETLSEVNDCHNDVKHVLDKAVNVSKFGHENLTENVFVTASTDKSNIAEAGENSRRKEEKSDITSKQSDSVNHVTRKVEAYIKEHIRPLCKSGVITADQYRWVVAKTTDKVMKHHCKAKNANFLIKEGEKVKKLAEQYAEAAQQNRKN 1288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi707g00005 1288 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 14 95 IPR013083 -
Gabi707g00005 1288 ProSiteProfiles Zinc finger RING-type profile. 33 72 IPR001841 -
Gabi707g00005 1288 MobiDBLite consensus disorder prediction 331 345 - -
Gabi707g00005 1288 SMART PHD_3 131 183 IPR001965 -
Gabi707g00005 1288 SUPERFAMILY RING/U-box 32 78 - -
Gabi707g00005 1288 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 131 183 IPR013083 -
Gabi707g00005 1288 MobiDBLite consensus disorder prediction 960 990 - -
Gabi707g00005 1288 ProSiteProfiles Zinc finger PHD-type profile. 65 185 IPR019787 -
Gabi707g00005 1288 MobiDBLite consensus disorder prediction 1187 1210 - -
Gabi707g00005 1288 MobiDBLite consensus disorder prediction 193 212 - -
Gabi707g00005 1288 MobiDBLite consensus disorder prediction 1189 1210 - -
Gabi707g00005 1288 MobiDBLite consensus disorder prediction 756 780 - -
Gabi707g00005 1288 MobiDBLite consensus disorder prediction 763 779 - -
Gabi707g00005 1288 Coils Coil 538 558 - -
Gabi707g00005 1288 SUPERFAMILY FYVE/PHD zinc finger 145 188 IPR011011 -
Gabi707g00005 1288 MobiDBLite consensus disorder prediction 311 353 - -
Gabi707g00005 1288 Pfam PHD-finger 148 183 IPR019787 -
Gabi707g00005 1288 PANTHER RING FINGER PROTEIN 41, 151 114 1278 - -
Gabi707g00005 1288 Pfam Ring finger domain 32 72 IPR001841 -
Gabi707g00005 1288 SMART ring_2 33 71 IPR001841 -
Gabi707g00005 1288 SMART ring_2 123 182 IPR001841 -
Gabi707g00005 1288 ProSitePatterns Zinc finger RING-type signature. 49 58 IPR017907 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi707g00005 33 84 C3H Transcription Factor Family AT3G58030 37.037 5.49e-07 51.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Gabi707g00005 PHD 1.7e-08 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi707g00005 - - gmx:100808102 2016.51