Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi704g00214 ATGGTTCTTTCTTTCATACACAATGTTCAAGCTCCGGACACTGGAGCAAATACCATGACAGAATTGCCCCAACCTCTTCATCCAAACAAGGTGGTTGTAATAGTAGCTCTAAGCCTTATGTTTTCCATAACATTTCTCTTAGCTGTCTATGTAAGGTTTTGTAGACGTAATGAACTTATGCTCATAAATGGTCATCATTTACCGATTTTTCAAGGACTAACTCGGTCAAGGTCACCAAGTGTTTCAGGGTTAGACAAACAAGTAATTGAAACACTCCCATTTTTCAAGTTTTCTTCACTCAAGGGATCCAAGCATGGCCTAGAATGTATCGTTTGCTTGTCACAATTTGAGGACACTGAGACACTAAGACTATTGCCAAAGTGCAAGCATGCTTTTCACATGAACTGCATTGACAAGTGGCTTGAAAATCATTCTAGTTGCCCTCTTTGCAGGAACAGTATTGACCCTGAGGATATCAAGAACTTCAATTACTCTATCAGCTCAAGGTTCCTTCGAGTTCCTTCAAATTTAACAGAGGATACAAATCTTGAAATCTTTGTCCAAAGGGTGCCATCCCAGAGAGGCTCATCAAGATTTAATATTGGAAGCAGCTTTTTTGATGTGGGCAAGAGCAACAAAGAAGAACTTCTCACTGAGCAAGAAGTTGATGGTGTAAATTGGAAGCTCGTGCACAAGTTCAATCACAAAATTGTTGTCTCTGGTGTTGTTACAAGGAGCAGGTGGAGTGATCTTAATTCTTCAGATATGCTTTTCTTGAATAGTGAGATGCTTAATGACATGTCAAACACAAGATTCTCTCCCTTGGAATCGACCAACAGTGAGAGGTTTCGTGGAGGTTCTAGTAGCATCCACTCTACTTTCAATGAGGATGAAAATTCATTTACGTTAATGAATCCTGTTGAGAAGAGATCCATGTCTGAGATTGCTTATGTTCCAAGGTTCGCTGAAATCAGCAAGCAGAATAGAATTAAAGAAGCTGTAACATCTAGTGGGAACATTGGAAGGGAAGAGAGATTGAGGAGGACTTGGTTGCCAATTGCTCAGCGAACAGTTCAATGGTTTTCAAGAGAATTTGAACACAAACGTTTAGCTTCAAATGTTTGA 1125 0.3973 MVLSFIHNVQAPDTGANTMTELPQPLHPNKVVVIVALSLMFSITFLLAVYVRFCRRNELMLINGHHLPIFQGLTRSRSPSVSGLDKQVIETLPFFKFSSLKGSKHGLECIVCLSQFEDTETLRLLPKCKHAFHMNCIDKWLENHSSCPLCRNSIDPEDIKNFNYSISSRFLRVPSNLTEDTNLEIFVQRVPSQRGSSRFNIGSSFFDVGKSNKEELLTEQEVDGVNWKLVHKFNHKIVVSGVVTRSRWSDLNSSDMLFLNSEMLNDMSNTRFSPLESTNSERFRGGSSSIHSTFNEDENSFTLMNPVEKRSMSEIAYVPRFAEISKQNRIKEAVTSSGNIGREERLRRTWLPIAQRTVQWFSREFEHKRLASNV 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi704g00214 374 CDD RING-H2_EL5-like 108 151 - -
Gabi704g00214 374 Pfam Ring finger domain 108 151 IPR001841 -
Gabi704g00214 374 SUPERFAMILY RING/U-box 88 156 - -
Gabi704g00214 374 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 13 364 - -
Gabi704g00214 374 ProSiteProfiles Zinc finger RING-type profile. 109 151 IPR001841 -
Gabi704g00214 374 SMART ring_2 109 150 IPR001841 -
Gabi704g00214 374 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 83 159 IPR013083 -
Gabi704g00214 374 FunFam RING-H2 finger protein ATL43 84 158 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi704g00214 Gabi-Chr704 1797739 1798863 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi704g00214 28 361 C3H Transcription Factor Family AT2G20030 43.516 3.67e-80 249