Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi704g00208 ATGGAAGCACCCAAGTTTTTCCAGAGCAGCTTTTGCCCACAATTCCCCTCCGACAACAAGAGCAATAATAACGCCAGCGCTACCGACCACTTCATCGTCGAGGACCTCCTCGACTTCTCCAACGACGACGCTATCATTACCGACACCACCTTCGACTCCGTGCCCGGCATCTCCACCGATTCTTCCACCGTAACCGCCGTTGATAGCTGCAACTCCTCCTCCTTCTCCCCCAACCTCGTCGCCGATATTGGTTGCCGGAATATCTCCGACGGAAATCTCTCCGGTGACCTCTGCGTTCCGTATGATGACCTAGCGGAGCTAGAATGGCTTTCAAATTTTGTGGAGGAATCGTTTTCAAGCGAGGACCTGCAGAAGCTGCAGTTGATATCAGGAATGAAGGCGCGACACGACGACGCATCAAAGGCCCGTGAGTTTCACTCCGAGCCCAACCGAAACAACCCGATATTCAACAACGAAGTGTCGGTTCCAGCTAAGGCCCGAAGCAAGAGAACCCGTGGGCCCCCATGCAACTGGACCTCACGATTACTCGTTCTGTCCCCAACGACGTCGTCTTGTTCTGATCCTGACTTCATAATTCCCACCCCTACTTCGCCCTCCGTTGCGGCTTCGCTCCCCTCGAAAAAACCGGCAAAGGTTGCTCCGAGGAAGAAGGAAGGCGGCGACGGCAGCGGCGGGGACGGACGCAAGTGTCTGCATTGCGCCACGGACAAGACGCCGCAGTGGCGGACTGGGCCCATGGGCCCAAAGACGCTGTGCAATGCTTGTGGCGTGAGGTATAAGTCGGGCCGGTTGGTGCCCGAGTACAGGCCCGCGGCGAGCCCGACGTTTGTGCTGACGAAGCACTCGAACTCGCACCGGAAAGTGCTGGAGCTGCGAAGGCAGAAGGAGATGGTGCGGGCCCAGCAGCAACAGTTCCTACAACATCATCATCATCAGAATATGATGTTTGATGTATCCAACGGTGACGATTACTTGATCCACCAACATGTGGGACCCGATTTCACGCAGCTGATCTAG 1038 0.5607 MEAPKFFQSSFCPQFPSDNKSNNNASATDHFIVEDLLDFSNDDAIITDTTFDSVPGISTDSSTVTAVDSCNSSSFSPNLVADIGCRNISDGNLSGDLCVPYDDLAELEWLSNFVEESFSSEDLQKLQLISGMKARHDDASKAREFHSEPNRNNPIFNNEVSVPAKARSKRTRGPPCNWTSRLLVLSPTTSSCSDPDFIIPTPTSPSVAASLPSKKPAKVAPRKKEGGDGSGGDGRKCLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPAASPTFVLTKHSNSHRKVLELRRQKEMVRAQQQQFLQHHHHQNMMFDVSNGDDYLIHQHVGPDFTQLI 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi704g00208 345 PANTHER GATA TRANSCRIPTION FACTOR 21 309 - -
Gabi704g00208 345 MobiDBLite consensus disorder prediction 218 234 - -
Gabi704g00208 345 SMART GATA_3 231 281 IPR000679 GO:0006355|GO:0043565
Gabi704g00208 345 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 233 295 - -
Gabi704g00208 345 PIRSF Txn_fac_GATA_plant 9 327 IPR016679 GO:0003677|GO:0005634|GO:0045893
Gabi704g00208 345 Pfam GATA zinc finger 237 270 IPR000679 GO:0006355|GO:0043565
Gabi704g00208 345 CDD ZnF_GATA 236 283 IPR000679 GO:0006355|GO:0043565
Gabi704g00208 345 FunFam GATA transcription factor 228 313 - -
Gabi704g00208 345 Gene3D - 233 318 IPR013088 GO:0006355|GO:0008270
Gabi704g00208 345 ProSitePatterns GATA-type zinc finger domain. 237 262 IPR000679 GO:0006355|GO:0043565
Gabi704g00208 345 ProSiteProfiles GATA-type zinc finger domain profile. 231 267 IPR000679 GO:0006355|GO:0043565
Gabi704g00208 345 MobiDBLite consensus disorder prediction 203 234 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi704g00208 Gabi-Chr704 1687534 1689004 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi704g00208 28 345 C2C2-Gata Transcription Factor Family AT5G25830 54.491 1.81e-97 290
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Gabi704g00208 GATA 3.1e-15 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi704g00208 - - zju:107420464 499.59