Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi704g00175 ATGGCTCGAGGAAAGATCCAGATCAAGAGGATAGAGAACACCACAAACCGTCAGGTAACTTACTCTAAACGACGGAATGGCCTTTTCAAGAAGGCCAACGAGCTCACCGTTCTCTGTGATGCCAAGGTTTCTATTGTTATGTTCTCCAGCACTGGCAAGCTCCACGAGTACATTAGCCCCTCCACCTCAACAAAGCAGTTCTTCGATCAGTACCAGATGACTGTTGGAACTGATCTGTGGAGCTCTCATTATGAGAATATGCAAGAGAACTTGAAGAAACTCGGAGAGGTGAACAGGAATCTTCGCAAGGAGATTAGGCAGAGGATGGGGGATTGTCTGAACGATCTGAACATGGAAGACCTTAGGCTCCTTGAGGAAGAAATGGACAAGGCTTCCAAGGTTGTTCGTGAGCGTAAGTATAAGGTGATAACTAATCAGATTGACACCCAAAGGAAGAAGTTTAATAACGAGAAAGAAGTACACAACAGACTCGTGCGTGACTTAGAAGCAAGAGCGGAAGATCCACGCTTTGGAATGATAGACAATGGAGGGGAGTATGATTCTGTCATTGGATTCTCAAATATTGGTCCAAGGATGTTTGCCTTGAGCCTACAGCCTAGCCATCCTAATGCCCATGACGGAGCAGGGTCTGATCTAACCACTTACCCGTTACTTTTTTAG 681 0.4567 MARGKIQIKRIENTTNRQVTYSKRRNGLFKKANELTVLCDAKVSIVMFSSTGKLHEYISPSTSTKQFFDQYQMTVGTDLWSSHYENMQENLKKLGEVNRNLRKEIRQRMGDCLNDLNMEDLRLLEEEMDKASKVVRERKYKVITNQIDTQRKKFNNEKEVHNRLVRDLEARAEDPRFGMIDNGGEYDSVIGFSNIGPRMFALSLQPSHPNAHDGAGSDLTTYPLLF 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi704g00175 226 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Gabi704g00175 226 Coils Coil 84 104 - -
Gabi704g00175 226 Gene3D - 13 84 IPR036879 GO:0003677|GO:0046983
Gabi704g00175 226 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 162 - -
Gabi704g00175 226 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Gabi704g00175 226 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Gabi704g00175 226 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Gabi704g00175 226 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Gabi704g00175 226 ProSiteProfiles K-box domain profile. 84 174 IPR002487 GO:0003700|GO:0005634|GO:0006355
Gabi704g00175 226 Pfam K-box region 81 168 IPR002487 GO:0003700|GO:0005634|GO:0006355
Gabi704g00175 226 Coils Coil 151 171 - -
Gabi704g00175 226 CDD MADS_MEF2_like 2 80 IPR033896 GO:0000977|GO:0045944
Gabi704g00175 226 SUPERFAMILY SRF-like 3 94 IPR036879 GO:0003677|GO:0046983
Gabi704g00175 226 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Gabi704g00175 226 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi704g00175 Gabi-Chr704 1395930 1398617 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi704g00175 1 225 MADS-box Gene Family AT3G54340 57.143 1.73e-96 279
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Gabi704g00175 K-box 5.7e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi704g00175 K09264 - gmx:547720 407.912