Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi704g00162 ATGCAGAAACCAGGCATGGGAACTGAGGAGAAAAAGCAGTTGAAGAAATCAGCACAGGCCAGCTCCAGAAAGGGTTGTATGAGGGGTAAAGGAGGCCCCGAAAACGCAAGTTGCACCTACAAAGGTGTGAGACAGAGAACTTGGGGAAAATGGGTTGCTGAAATCCGTGAACCCAATCGTGGTGCTCGCCTCTGGCTTGGGACTTTTGAGACCTCCTATGAGGCTGCCTTGGCTTATGATGCTGCTGCACGCAAGCTTTATGGCTCAGATGCTAAGCTCAATCTACCAGAACTCCCTGTGTCTGAAAAATCTCAATGTCCACCACCACCATCTTCTGTTAGCCCTGATCAGATTGTCCAAATAGAAAACCTAAACCAGCCTCATCCTCAGCCTCAGATTCAACCCAACTTAAACATGACCAATATTTCTACTTTCAATACCAACCCACCAGTTTCCATGGCTTCTCAACAAGTTGGAGTTGCACCAATATACACCAGTGACTCCATCATGTCTCTTCCCTTGGAAATCAACCCCATGCCAATTGAAACCTATGCAAAGCCCATGGAGAAGGAAGAGGAGTTTTGTCCATTTTGGGGGACAATGAATGATGGCTTGCCAATTTTAGATGATTCCATGAATGATCACTTTTCAATTTTAGAAGATTCCATGAATGAGGGCTTGCCAATTTTAGATGATTCCATCTGGGCAGAAACTGACATGTCCCTAGATTTTCCCATAACTGCAGATGCTGGTGTTTATGCAACTGGTAACGTGCCAGAGGCTGGGGTTTATGCAACTGGTAACTTGCCATTGCCACCAGATGCTGGGGTTTATGCAACGGATAACTTGCCACCAGATGCGGCTGTCTGGGACCCTATGCAGACTCCATGGTGCATGTAA 900 0.4656 MQKPGMGTEEKKQLKKSAQASSRKGCMRGKGGPENASCTYKGVRQRTWGKWVAEIREPNRGARLWLGTFETSYEAALAYDAAARKLYGSDAKLNLPELPVSEKSQCPPPPSSVSPDQIVQIENLNQPHPQPQIQPNLNMTNISTFNTNPPVSMASQQVGVAPIYTSDSIMSLPLEINPMPIETYAKPMEKEEEFCPFWGTMNDGLPILDDSMNDHFSILEDSMNEGLPILDDSIWAETDMSLDFPITADAGVYATGNVPEAGVYATGNLPLPPDAGVYATDNLPPDAAVWDPMQTPWCM 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi704g00162 299 Gene3D AP2/ERF domain 39 97 IPR036955 GO:0003700|GO:0006355
Gabi704g00162 299 SMART rav1_2 39 102 IPR001471 GO:0003700|GO:0006355
Gabi704g00162 299 SUPERFAMILY DNA-binding domain 39 96 IPR016177 GO:0003677
Gabi704g00162 299 MobiDBLite consensus disorder prediction 1 17 - -
Gabi704g00162 299 ProSiteProfiles AP2/ERF domain profile. 39 96 IPR001471 GO:0003700|GO:0006355
Gabi704g00162 299 MobiDBLite consensus disorder prediction 1 38 - -
Gabi704g00162 299 PRINTS Ethylene responsive element binding protein signature 40 51 IPR001471 GO:0003700|GO:0006355
Gabi704g00162 299 PRINTS Ethylene responsive element binding protein signature 62 78 IPR001471 GO:0003700|GO:0006355
Gabi704g00162 299 CDD AP2 38 98 IPR001471 GO:0003700|GO:0006355
Gabi704g00162 299 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 12 196 - -
Gabi704g00162 299 Pfam AP2 domain 39 88 IPR001471 GO:0003700|GO:0006355
Gabi704g00162 299 FunFam Ethylene-responsive transcription factor 2 38 97 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi704g00162 Gabi-Chr704 1288920 1289819 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi704g00162 11 115 AP2-EREBP Transcription Factor Family AT1G75490 75.238 5.23e-49 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gabi704g00162 AP2 2.1e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi704g00162 - - gmx:100790057 300.441