Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi704g00113 ATGGCTTTTCACGACCATCTCAACCACGAAATAGCTTTTCAGCGTTTCACGGAGGAGCAACAGTTAACTGAGAATAGAGATATGCAGCAGAGGGTGCCGCCGACATGGCTCAACAACGTTAATAACGCTGGACATCACCGTCAGCAGAATTTCATGCACTTGCAAGCGGATCACACGACCGAGAAAAGCATGGATCGGAACCAGAGCGATCATGGAAATTGTGAATCCGAGGATTTAAGGGAATACAAAGCTGACATTTTGGGACACCCCCTTTACGACCAGCTCTTATCAGCTCATGTTTCATGTCTTAGGATTGCCACCCCCGTTGACCAGCTTCCGAGGATCGATGCTCAGCTGCAACAGTCGCAGCGCGTGGTGGAAAAATACTCTGCTCTTGGAAATGGAGTGGTTAATGAGAAGGAGCTTGATCAGTTTATGACGCATTATGTTCTGTTGCTGTGTGCCTTCAAGGAGCAATTGCAACAACATGTCCGTGTTCATGCCATGGAAGCTGTGATGGCTTGTTGGGATCTCGAGCAGTCTCTCCAAAGCTTGACAGGTGTATCTCCTGGTGAAGGAACGGGTGCAACAATGTCAGACGATGAAGATGACCAGGCAGAGAGCAATGCCAACTTATACGAAGGAAGCTTTGATGGTGGTGATAGTCTTGGCTTTGGTCCTCTTGTCCCCACTGAGACTGAAAAATCTTTGATGGAGAGAGTGAGGCATGAGTTGAAGCACGAGTTAAAACAGGGTTATAAGGAGAAGATTGTGGACATAAGAGAAGAAATTCTACGAAAGAGACGAGCTGGGAAGCTACCAGGGGACACCACGTCCCTTTTGAAAGCTTGGTGGCAATCACATTCTAAATGGCCCTACCCTACTGAGGAAGACAAGGCTAGATTGGTGCAGGAAACAGGCTTGCAATTAAAGCAGATAAATAACTGGTTCATCAATCAAAGGAAAAGGAACTGGCATGCTAGCTCCACATCGTCTAGTAACTCCAAAAGCAAGCGCAAGAGGGGAAACCAGTAA 1035 0.4715 MAFHDHLNHEIAFQRFTEEQQLTENRDMQQRVPPTWLNNVNNAGHHRQQNFMHLQADHTTEKSMDRNQSDHGNCESEDLREYKADILGHPLYDQLLSAHVSCLRIATPVDQLPRIDAQLQQSQRVVEKYSALGNGVVNEKELDQFMTHYVLLLCAFKEQLQQHVRVHAMEAVMACWDLEQSLQSLTGVSPGEGTGATMSDDEDDQAESNANLYEGSFDGGDSLGFGPLVPTETEKSLMERVRHELKHELKQGYKEKIVDIREEILRKRRAGKLPGDTTSLLKAWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHASSTSSSNSKSKRKRGNQ 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi704g00113 344 SMART HOX_1 266 331 IPR001356 GO:0003677
Gabi704g00113 344 FunFam homeobox protein knotted-1-like 3 isoform X1 265 326 - -
Gabi704g00113 344 SMART KNOX2_2 132 187 IPR005541 GO:0003677|GO:0005634
Gabi704g00113 344 Pfam KNOX1 domain 82 123 IPR005540 GO:0003677|GO:0005634
Gabi704g00113 344 CDD homeodomain 267 326 IPR001356 GO:0003677
Gabi704g00113 344 Pfam ELK domain 244 265 IPR005539 GO:0003677
Gabi704g00113 344 Pfam Homeobox KN domain 284 323 IPR008422 GO:0003677|GO:0006355
Gabi704g00113 344 Gene3D - 263 342 - -
Gabi704g00113 344 ProSiteProfiles ELK domain profile. 244 264 IPR005539 GO:0003677
Gabi704g00113 344 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 90 332 - -
Gabi704g00113 344 SMART ELK_2 244 265 IPR005539 GO:0003677
Gabi704g00113 344 Pfam KNOX2 domain 137 186 IPR005541 GO:0003677|GO:0005634
Gabi704g00113 344 SMART KNOX1_2 80 124 IPR005540 GO:0003677|GO:0005634
Gabi704g00113 344 MobiDBLite consensus disorder prediction 324 344 - -
Gabi704g00113 344 MobiDBLite consensus disorder prediction 187 206 - -
Gabi704g00113 344 SUPERFAMILY Homeodomain-like 266 330 IPR009057 -
Gabi704g00113 344 ProSiteProfiles 'Homeobox' domain profile. 264 327 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi704g00113 Gabi-Chr704 974000 978947 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi704g00113 82 341 Homeobox Transcription Factor Family AT5G25220 82.955 2.34e-161 456
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Gabi704g00113 KNOX2 5.3e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi704g00113 - - gmx:100781997 587.8