Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi704g00106 ATGGGTTCGGCCTCTAGTAGACATGGGTCTCGCCCTTCTAGTCCCAGGGTCAACCGCTTCAGACTATCCTCTCTTCTCTGTGGCACCTCCACCTCCCGTTCTACTTATCAGATGGAAGAACATCCATCTGATCTTCAGGTAAATTCGGCAAGAGATTTTGATGATGGAATTCGGAAAGTCACTGAGGAGTCATCTTTAGCAAGTAGAGAAGATAGAATTAGCTGCAGTCCTCATGCTGAAACTGTAACTTTACCTGATATGAGAACTGAGTTCTACGGGAATACCAATGTTGAAGGTTCTTCCAGAAATGTTGCAACAAGTAGTCAGAGGAAGTGCTTGTCTGAATGTAAGGAGCTAGTCCCTCATCAGGTAAGTGCCGGTCATAGTCGTCATGAATCATATAGTCATAGTAGCAACACAGCTAGTACTTCATTTGTAGAACAGCGGTCTTCAGATCCAGTCTCTGTTAATGTTTCTGCTAACAAGGATGCAGTCAATAATGTTGATGATCCAGTGGTTAGTGGTGTCTCTCAAATCTCTTGCGAGACAATGCATCCAAGGAGTCCAATCCCTCAAGAGCATGGAAATTCCAGTTCTGAAAACGAACCTCGTCGCGAGACAATACCTTCAGGGTTAGGTATTCTTGTGTCCAATCGGGAAAGAGGTCAAAATGACAGCGTGCTTCAAGTTGATGTGGTCACAATATCTTCCAACATTTTGTCTGCCAGCAATGCTGATTCCAATGATCATGATGCCAGAAGGAATGGTAGGAGATTATTTTGGGATGCTTTTTCACGACGTAGTTCTAGAAGGCTAGGTGATTCTCCAACCATTGTCTTCTCCACTGGAGGTGCTGATGACCCAGGATCTCAAGATCGATGGCTTGTTGATTTTGGTGGTGATTTCTCAAATGATGGGGTTGGAAGTGCTTCTGGGTATATGGGCAGCAGATTTCACAGATTGCATGAACGAATGCAACACTCAAGATCTGAGATCTGGGAAAGGCTTCGTGGTAGCTTTGATGAGATTGGTAGGTGGAATTCTTCCTGTCCATTAGGACTCCATGCAGATGGTATGTGCTCATGCGAGTCTTTCCCCATGGCTGAGGAATCTAGCACTCAAGCAAGTATTTCAAGAATAGTCATGCTGGCTGAGGCTCTGTTTGAGGTCTTAGATGAAATCCATCGTCAACCTGGATCACTTTCCCTATCCATGGTCTCTTTCCCGGCACCTGAATCAATTGTTGACTCTTTGCCTCTAAAGTCTCACAAAAAGGTTGATGTAGCTGATGGAGGCAATGATGCTGATGAACAATGTTACATATGCCTGGCGGAGTATGAAGAAGGGGACCAAATACGAGTTCTTCCTTGCAACCATGAGTATCACATGTCTTGTGTCGATAAGTGGCTTAAAGAAATACATGGTGTATGTCCTCTGTGTCGTGGCAATGTTTGTGGAGGGTTCACGGAGTCTTCCGCCGACTCAGAAGTGCAGTCTCATTGA 1503 0.4491 MGSASSRHGSRPSSPRVNRFRLSSLLCGTSTSRSTYQMEEHPSDLQVNSARDFDDGIRKVTEESSLASREDRISCSPHAETVTLPDMRTEFYGNTNVEGSSRNVATSSQRKCLSECKELVPHQVSAGHSRHESYSHSSNTASTSFVEQRSSDPVSVNVSANKDAVNNVDDPVVSGVSQISCETMHPRSPIPQEHGNSSSENEPRRETIPSGLGILVSNRERGQNDSVLQVDVVTISSNILSASNADSNDHDARRNGRRLFWDAFSRRSSRRLGDSPTIVFSTGGADDPGSQDRWLVDFGGDFSNDGVGSASGYMGSRFHRLHERMQHSRSEIWERLRGSFDEIGRWNSSCPLGLHADGMCSCESFPMAEESSTQASISRIVMLAEALFEVLDEIHRQPGSLSLSMVSFPAPESIVDSLPLKSHKKVDVADGGNDADEQCYICLAEYEEGDQIRVLPCNHEYHMSCVDKWLKEIHGVCPLCRGNVCGGFTESSADSEVQSH 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi704g00106 500 MobiDBLite consensus disorder prediction 183 205 - -
Gabi704g00106 500 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 404 485 IPR013083 -
Gabi704g00106 500 MobiDBLite consensus disorder prediction 1 52 - -
Gabi704g00106 500 MobiDBLite consensus disorder prediction 183 207 - -
Gabi704g00106 500 FunFam Putative RING zinc finger domain superfamily protein 405 486 - -
Gabi704g00106 500 SUPERFAMILY RING/U-box 426 484 - -
Gabi704g00106 500 PANTHER RING ZINC FINGER DOMAIN SUPERFAMILY PROTEIN-RELATED 1 499 - -
Gabi704g00106 500 Pfam Ring finger domain 438 481 IPR001841 -
Gabi704g00106 500 MobiDBLite consensus disorder prediction 1 44 - -
Gabi704g00106 500 ProSiteProfiles Zinc finger RING-type profile. 439 481 IPR001841 -
Gabi704g00106 500 SMART ring_2 439 480 IPR001841 -
Gabi704g00106 500 MobiDBLite consensus disorder prediction 123 155 - -
Gabi704g00106 500 MobiDBLite consensus disorder prediction 128 155 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi704g00106 Gabi-Chr704 911816 916183 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi704g00106 328 485 C3H Transcription Factor Family AT5G45290 48.276 1.09e-40 152
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi704g00106 - - gmx:100783604 796.964